Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M3O59_RS08620 Genome accession   NZ_CP142084
Coordinates   1959845..1960879 (+) Length   344 a.a.
NCBI ID   WP_064628758.1    Uniprot ID   A0A3E1KH10
Organism   Xanthomonas nasturtii strain 10053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1954845..1965879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O59_RS08610 (M3O59_008610) ubiB 1957266..1958942 (+) 1677 WP_249047074.1 2-polyprenylphenol 6-hydroxylase -
  M3O59_RS08615 (M3O59_008615) lexA 1959030..1959671 (+) 642 WP_064628756.1 transcriptional repressor LexA -
  M3O59_RS08620 (M3O59_008620) recA 1959845..1960879 (+) 1035 WP_064628758.1 recombinase RecA Machinery gene
  M3O59_RS08625 (M3O59_008625) recX 1961150..1961638 (+) 489 WP_116906265.1 recombination regulator RecX -
  M3O59_RS08630 (M3O59_008630) alaS 1961740..1964388 (+) 2649 WP_116906266.1 alanine--tRNA ligase -
  M3O59_RS08635 (M3O59_008635) csrA 1964527..1964739 (+) 213 WP_064628764.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37172.80 Da        Isoelectric Point: 5.1940

>NTDB_id=921389 M3O59_RS08620 WP_064628758.1 1959845..1960879(+) (recA) [Xanthomonas nasturtii strain 10053]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARTYLRDNPQVAVRL
EAELREKFQPAEAPREAGDDAEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=921389 M3O59_RS08620 WP_064628758.1 1959845..1960879(+) (recA) [Xanthomonas nasturtii strain 10053]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTCATGCG
TATGGGCGACCGCGTCATCGAGGCGGTCGAAGTCATTCCGACCGGCTCGCTGATGCTGGACATCGCCCTGGGGATCGGCG
GCCTTCCGAAGGGTCGCGTGGTCGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCGATTGCC
CAGTGTCAGAAGCTGGGCGGCACCGCAGCCTTCATCGACGCCGAGCATGCGCTGGACCCGATCTATGCGGCCAAGCTGGG
CGTCAATGTCGACGACCTGCTGCTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGAGCTCGGTGGATATCGTGGTGATCGACTCGGTCGCCGCACTGACCCCGAAAGCAGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCACGTCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAATACGCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTCTACGGCGA
AGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGTGTGGAGGCCAAGCTGGTCGACAAGGCCGGCGCTTGGTACAGCT
ATGGCGATGAGCGCATCGGTCAGGGCAAGGACAATGCGCGTACTTACCTGCGCGACAACCCGCAGGTTGCAGTGCGGCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCTGCCGAAGCGCCGCGCGAAGCCGGCGACGACGCAGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1KH10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.767

100

0.698
  recA Pseudomonas stutzeri DSM 10701

69.883

99.419

0.695
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.988

0.686
  recA Acinetobacter baumannii D1279779

71.646

95.349

0.683
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.767

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.377

97.093

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.353

92.151

0.593
  recA Helicobacter pylori strain NCTC11637

60.843

96.512

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

94.477

0.584
  recA Helicobacter pylori 26695

60.542

96.512

0.584
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.93

0.558