Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U0O11_RS15465 Genome accession   NZ_CP142020
Coordinates   3734487..3735554 (-) Length   355 a.a.
NCBI ID   WP_043332943.1    Uniprot ID   A0A0P7E2A3
Organism   Cobetia sp. D5 isolate Qingdao     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3729487..3740554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0O11_RS15455 (U0O11_15455) alaS 3730824..3733427 (-) 2604 WP_153636586.1 alanine--tRNA ligase -
  U0O11_RS15460 (U0O11_15460) - 3733670..3734314 (-) 645 WP_324690661.1 regulatory protein RecX -
  U0O11_RS15465 (U0O11_15465) recA 3734487..3735554 (-) 1068 WP_043332943.1 recombinase RecA Machinery gene
  U0O11_RS15470 (U0O11_15470) - 3735770..3736258 (-) 489 WP_225348181.1 CinA family protein -
  U0O11_RS15475 (U0O11_15475) mutS 3736473..3739052 (+) 2580 WP_153636588.1 DNA mismatch repair protein MutS -
  U0O11_RS15480 (U0O11_15480) fdxA 3739332..3739655 (+) 324 WP_043333067.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37925.18 Da        Isoelectric Point: 4.8504

>NTDB_id=921106 U0O11_RS15465 WP_043332943.1 3734487..3735554(-) (recA) [Cobetia sp. D5 isolate Qingdao]
MAKDDNRTKALNAALSQIERQFGKGAVMRMGDAPRVAIPSVSTGSLGLDIALGIGGLPFGRVVEIYGPESSGKTTLTLSV
IAQAQKQGKVCAFIDAEHALDPSYAEKLGVNLDEMLVSQPDTGEQALEIVDMLVRSGGVDVIIVDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKVTGHIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKSGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCGLVGKSGAWYSYQGSKIGQGKANSAQYLEDNPAIMEEI
ETQIRAQLLAAPEAKEEPKETAAAESEDDLDIDLD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=921106 U0O11_RS15465 WP_043332943.1 3734487..3735554(-) (recA) [Cobetia sp. D5 isolate Qingdao]
ATGGCAAAGGACGACAATCGTACCAAGGCGCTGAACGCGGCGCTGTCCCAGATCGAGCGCCAGTTCGGCAAGGGCGCCGT
CATGCGCATGGGCGATGCCCCGCGTGTGGCCATCCCGTCGGTTTCCACCGGTTCTCTGGGGCTGGATATCGCACTCGGCA
TCGGCGGCCTGCCCTTCGGGCGCGTGGTCGAGATCTATGGCCCGGAATCCTCGGGCAAGACGACACTGACCCTCTCGGTC
ATCGCCCAGGCGCAGAAGCAGGGCAAGGTCTGTGCCTTCATCGATGCCGAGCACGCACTGGATCCGTCCTACGCCGAGAA
GCTGGGCGTCAATCTGGACGAGATGCTGGTCTCCCAGCCGGACACCGGTGAGCAGGCGCTCGAGATCGTCGACATGCTGG
TACGCTCCGGCGGCGTTGACGTCATCATCGTCGACTCCGTGGCGGCACTGACGCCGCGTGCCGAGATCGAAGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCGCGTCTGATGTCCCAGGCGCTGCGCAAGGTGACCGGTCACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCCGAAACCACGACTGGCGGTA
ACGCACTGAAGTTCTACTCCAGTGTGCGTCTGGATATCCGTCGCACCGGTTCCGTGAAGTCCGGTGATGAAGTCACCGGT
AACGAGACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAA
GGGCATCTATCACGCCGGTGAGGTGATCGATCTGGGCGTGCAGTGTGGTCTGGTCGGCAAGTCAGGCGCCTGGTACAGCT
ATCAGGGCAGCAAGATCGGTCAGGGCAAGGCCAATTCCGCCCAGTACCTGGAAGACAATCCCGCCATCATGGAGGAGATT
GAAACCCAGATCCGTGCCCAGTTGCTGGCAGCGCCGGAAGCCAAGGAAGAGCCGAAAGAGACCGCGGCCGCCGAGAGTGA
AGACGACCTGGATATCGATCTCGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P7E2A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.943

98.31

0.786
  recA Acinetobacter baylyi ADP1

73.469

96.62

0.71
  recA Acinetobacter baumannii D1279779

72.222

96.338

0.696
  recA Vibrio cholerae strain A1552

68.481

98.31

0.673
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.481

98.31

0.673
  recA Glaesserella parasuis strain SC1401

67.908

98.31

0.668
  recA Neisseria gonorrhoeae MS11

72.446

90.986

0.659
  recA Neisseria gonorrhoeae MS11

72.446

90.986

0.659
  recA Neisseria gonorrhoeae strain FA1090

72.446

90.986

0.659
  recA Ralstonia pseudosolanacearum GMI1000

71.111

88.732

0.631
  recA Helicobacter pylori 26695

60.704

96.056

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.831

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

93.803

0.577
  recA Helicobacter pylori strain NCTC11637

60.117

96.056

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.438

90.141

0.572
  recA Streptococcus pyogenes NZ131

56.901

100

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.102

99.155

0.566
  recA Streptococcus mitis NCTC 12261

56.338

100

0.563
  recA Streptococcus pneumoniae D39

55.278

100

0.561
  recA Streptococcus pneumoniae TIGR4

55.278

100

0.561
  recA Streptococcus pneumoniae Rx1

55.278

100

0.561
  recA Streptococcus pneumoniae R6

55.278

100

0.561
  recA Streptococcus mitis SK321

56.056

100

0.561
  recA Streptococcus mutans UA159

56.056

100

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.447

92.676

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.099

91.268

0.521