Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VIW49_RS17960 Genome accession   NZ_CP142002
Coordinates   3758219..3759277 (-) Length   352 a.a.
NCBI ID   WP_028014189.1    Uniprot ID   A0A8E1V6K0
Organism   Enterobacter bugandensis strain H4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3753219..3764277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIW49_RS17945 (VIW49_17945) csrA 3754464..3754649 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  VIW49_RS17950 (VIW49_17950) alaS 3754891..3757518 (-) 2628 WP_028014187.1 alanine--tRNA ligase -
  VIW49_RS17955 (VIW49_17955) recX 3757650..3758150 (-) 501 WP_248199707.1 recombination regulator RecX -
  VIW49_RS17960 (VIW49_17960) recA 3758219..3759277 (-) 1059 WP_028014189.1 recombinase RecA Machinery gene
  VIW49_RS17965 (VIW49_17965) pncC 3759367..3759864 (-) 498 WP_028014190.1 nicotinamide-nucleotide amidase -
  VIW49_RS17970 (VIW49_17970) - 3759994..3760872 (-) 879 WP_326431020.1 metal ABC transporter substrate-binding protein -
  VIW49_RS17975 (VIW49_17975) - 3760887..3761747 (-) 861 WP_326431022.1 metal ABC transporter permease -
  VIW49_RS17980 (VIW49_17980) - 3761744..3762397 (-) 654 WP_326431024.1 metal ABC transporter ATP-binding protein -
  VIW49_RS17985 (VIW49_17985) mltB 3762654..3763754 (-) 1101 WP_168733281.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37832.29 Da        Isoelectric Point: 4.8134

>NTDB_id=920776 VIW49_RS17960 WP_028014189.1 3758219..3759277(-) (recA) [Enterobacter bugandensis strain H4]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=920776 VIW49_RS17960 WP_028014189.1 3758219..3759277(-) (recA) [Enterobacter bugandensis strain H4]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCACTGGGCG
CGGGCGGTTTGCCGATGGGGCGTATCGTAGAAATCTACGGTCCGGAATCCTCAGGTAAAACGACGCTGACCCTGCAGGTT
GTTGCAGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
GCTGGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CACGCTCCGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTGGTGGATGCCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

94.034

0.795
  recA Vibrio cholerae strain A1552

84.592

94.034

0.795
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.487

99.148

0.699
  recA Acinetobacter baylyi ADP1

74.085

93.182

0.69
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.459

94.602

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56