Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VA210_RS05070 Genome accession   NZ_CP141773
Coordinates   1036226..1037269 (-) Length   347 a.a.
NCBI ID   WP_324713423.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031226..1042269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS05040 - 1031453..1032586 (+) 1134 WP_324713422.1 glycosyltransferase family 8 protein -
  VA210_RS05045 - 1032583..1033539 (-) 957 WP_000952288.1 PDC sensor domain-containing protein -
  VA210_RS05050 - 1033561..1034049 (-) 489 WP_001216271.1 shikimate kinase -
  VA210_RS05055 - 1034054..1034650 (-) 597 WP_000914532.1 AMIN domain-containing protein -
  VA210_RS05060 - 1034666..1034941 (-) 276 WP_000146212.1 hypothetical protein -
  VA210_RS05065 eno 1034934..1036214 (-) 1281 WP_000955621.1 phosphopyruvate hydratase -
  VA210_RS05070 recA 1036226..1037269 (-) 1044 WP_324713423.1 recombinase RecA Machinery gene
  VA210_RS05075 - 1037367..1038233 (+) 867 WP_324713424.1 menaquinone biosynthesis family protein -
  VA210_RS05080 - 1038230..1038997 (-) 768 WP_324713425.1 hypothetical protein -
  VA210_RS05085 - 1039085..1039666 (-) 582 WP_324713426.1 hypothetical protein -
  VA210_RS05090 - 1039678..1040262 (-) 585 WP_324713427.1 hypothetical protein -
  VA210_RS05095 - 1040363..1040569 (-) 207 WP_015427380.1 DUF4006 family protein -
  VA210_RS05100 ccoP 1040580..1041458 (-) 879 WP_324713428.1 cytochrome-c oxidase, cbb3-type subunit III -
  VA210_RS05105 - 1041460..1041678 (-) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37699.43 Da        Isoelectric Point: 5.7176

>NTDB_id=919389 VA210_RS05070 WP_324713423.1 1036226..1037269(-) (recA) [Helicobacter pylori strain P08205]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESISSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=919389 VA210_RS05070 WP_324713423.1 1036226..1037269(-) (recA) [Helicobacter pylori strain P08205]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGTTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAAACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATTATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTAGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.899

94.236

0.744
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.254

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.741

93.372

0.614
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Pseudomonas stutzeri DSM 10701

60.819

98.559

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.791

96.542

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.961

95.965

0.585
  recA Vibrio cholerae strain A1552

60.961

95.965

0.585
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

54.342

100

0.559
  recA Streptococcus pneumoniae Rx1

58.462

93.66

0.548
  recA Streptococcus pneumoniae D39

58.462

93.66

0.548
  recA Streptococcus pneumoniae R6

58.462

93.66

0.548
  recA Streptococcus pneumoniae TIGR4

58.462

93.66

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.154

93.66

0.545
  recA Streptococcus pyogenes NZ131

57.975

93.948

0.545
  recA Streptococcus mitis NCTC 12261

57.846

93.66

0.542
  recA Streptococcus mitis SK321

57.846

93.66

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.098

94.524

0.53
  recA Streptococcus mutans UA159

56.442

93.948

0.53