Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VA613_RS12000 Genome accession   NZ_CP141769
Coordinates   2402348..2403403 (+) Length   351 a.a.
NCBI ID   WP_407702845.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2397348..2408403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS11970 (VA613_11970) ribH 2398134..2398604 (+) 471 WP_324779246.1 6,7-dimethyl-8-ribityllumazine synthase -
  VA613_RS11975 (VA613_11975) nusB 2398711..2399163 (+) 453 WP_324779247.1 transcription antitermination factor NusB -
  VA613_RS11980 (VA613_11980) thiL 2399211..2400164 (+) 954 WP_324779248.1 thiamine-phosphate kinase -
  VA613_RS11985 (VA613_11985) - 2400145..2400675 (+) 531 WP_324779249.1 phosphatidylglycerophosphatase A -
  VA613_RS11990 (VA613_11990) - 2400663..2401160 (+) 498 WP_324779250.1 CinA family protein -
  VA613_RS11995 (VA613_11995) - 2401257..2402153 (-) 897 WP_324779251.1 WYL domain-containing protein -
  VA613_RS12000 (VA613_12000) recA 2402348..2403403 (+) 1056 WP_407702845.1 recombinase RecA Machinery gene
  VA613_RS12005 (VA613_12005) recX 2403381..2403836 (+) 456 WP_324779252.1 recombination regulator RecX -
  VA613_RS12010 (VA613_12010) - 2403892..2405871 (-) 1980 WP_324779253.1 O-antigen ligase family protein -
  VA613_RS12015 (VA613_12015) - 2406055..2406513 (-) 459 WP_324779254.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  VA613_RS12025 (VA613_12025) - 2407119..2408300 (-) 1182 WP_324779255.1 YeeE/YedE family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37516.85 Da        Isoelectric Point: 5.0610

>NTDB_id=919310 VA613_RS12000 WP_407702845.1 2402348..2403403(+) (recA) [Thiobacillus sedimenti strain SCUT-2]
MATPALADDKSKALAAALSQIEKQFGKGSVMRLGDHDVARDIQAVSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTL
TLQVIAEMQKTGGTAAFIDAEHALDPAYAAKLGVDVDNLLISQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEI
EGEMGDAHVGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAIKKGD
EVIGNETKVKVVKNKVSPPFKEAFFDILYGQGISREGEIIELGVAHKLVDKSGAWYAYQGEKIGQGKDNAREFLKEHPEI
AHEIEAKVRAAVGVNNPTVLAEDEDEAFEEA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=919310 VA613_RS12000 WP_407702845.1 2402348..2403403(+) (recA) [Thiobacillus sedimenti strain SCUT-2]
ATGGCTACCCCCGCATTGGCAGATGACAAGTCGAAGGCGCTCGCCGCCGCGCTGAGCCAGATCGAGAAGCAGTTCGGCAA
GGGCTCGGTGATGCGCCTCGGCGACCACGACGTCGCGCGCGACATCCAGGCCGTCTCGACCGGCTCGCTCGGCCTCGACA
TCGCGCTCGGCATCGGCGGCCTGCCGCGCGGCCGGGTGATCGAGATCTACGGCCCGGAATCGTCCGGCAAGACCACGCTG
ACGCTGCAGGTCATCGCCGAGATGCAGAAGACCGGCGGCACCGCGGCCTTCATCGACGCCGAACACGCGCTCGACCCCGC
CTACGCCGCCAAGCTCGGCGTCGACGTCGACAACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAAATCG
CCGACATGCTGGTGCGCTCGGGCTCGGTCGACATCGTCGTCGTCGACTCGGTCGCCGCGCTGACGCCGAAGGCCGAGATC
GAAGGCGAGATGGGCGATGCCCACGTCGGCCTGCAGGCGCGCCTGATGTCGCAGGCGCTCAGGAAGCTCACCGCCAACAT
CAAGCGCACCAACACGCTCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCCGAGACCA
CCACCGGCGGCAACGCGCTCAAGTTCTACGCGTCCGTGCGCCTCGACATCCGCCGCGTCGGCGCGATCAAGAAGGGCGAC
GAGGTCATCGGCAACGAGACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCGCCGTTCAAGGAAGCCTTCTTCGACAT
CCTCTACGGCCAGGGCATCTCGCGCGAGGGCGAGATCATCGAGCTGGGCGTCGCCCACAAGCTGGTCGACAAGTCGGGCG
CCTGGTACGCCTACCAGGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAGTTCCTCAAGGAGCATCCGGAAATC
GCCCACGAAATCGAGGCCAAGGTCCGCGCCGCGGTCGGCGTCAACAACCCGACCGTGCTGGCCGAGGACGAGGATGAAGC
CTTCGAGGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.659

93.447

0.735
  recA Pseudomonas stutzeri DSM 10701

74.412

96.866

0.721
  recA Acinetobacter baumannii D1279779

72.012

97.721

0.704
  recA Acinetobacter baylyi ADP1

75

92.308

0.692
  recA Glaesserella parasuis strain SC1401

69.767

98.006

0.684
  recA Neisseria gonorrhoeae MS11

72.34

93.732

0.678
  recA Neisseria gonorrhoeae MS11

72.34

93.732

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.34

93.732

0.678
  recA Vibrio cholerae strain A1552

73.602

91.738

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.602

91.738

0.675
  recA Helicobacter pylori strain NCTC11637

65.103

97.151

0.632
  recA Helicobacter pylori 26695

64.516

97.151

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.964

94.587

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.964

94.587

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.93

97.151

0.621
  recA Streptococcus mitis NCTC 12261

61.628

98.006

0.604
  recA Streptococcus pneumoniae D39

61.696

97.436

0.601
  recA Streptococcus pneumoniae TIGR4

61.696

97.436

0.601
  recA Streptococcus pneumoniae R6

61.696

97.436

0.601
  recA Streptococcus pneumoniae Rx1

61.696

97.436

0.601
  recA Streptococcus mutans UA159

62.5

95.726

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

63.526

93.732

0.595
  recA Streptococcus pyogenes NZ131

62.09

95.442

0.593
  recA Streptococcus mitis SK321

62.424

94.017

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.017

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

96.011

0.57