Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN28_RS02325 Genome accession   NZ_CP141725
Coordinates   476794..477945 (-) Length   383 a.a.
NCBI ID   WP_338997798.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471794..482945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS02295 (VNN28_02295) - 472176..472856 (-) 681 WP_338997796.1 GTP pyrophosphokinase family protein -
  VNN28_RS02300 (VNN28_02300) - 473173..473769 (+) 597 WP_017369478.1 CYTH domain-containing protein -
  VNN28_RS02305 (VNN28_02305) - 473899..474417 (+) 519 WP_017369479.1 hypothetical protein -
  VNN28_RS02310 (VNN28_02310) - 474476..474832 (-) 357 WP_338997797.1 YlbG family protein -
  VNN28_RS02315 (VNN28_02315) - 474816..475190 (-) 375 WP_017369481.1 YlbF family regulator -
  VNN28_RS02320 (VNN28_02320) - 475395..476759 (+) 1365 WP_165711820.1 amino acid permease -
  VNN28_RS02325 (VNN28_02325) recA 476794..477945 (-) 1152 WP_338997798.1 recombinase RecA Machinery gene
  VNN28_RS02330 (VNN28_02330) mutM 478046..478870 (-) 825 WP_096368741.1 DNA-formamidopyrimidine glycosylase -
  VNN28_RS02335 (VNN28_02335) - 479058..479801 (-) 744 WP_213495719.1 SIS domain-containing protein -
  VNN28_RS02340 (VNN28_02340) - 480136..480933 (+) 798 WP_338997799.1 tyrosine-protein phosphatase -
  VNN28_RS02345 (VNN28_02345) - 480936..482243 (+) 1308 WP_213495724.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40965.99 Da        Isoelectric Point: 5.6529

>NTDB_id=918980 VNN28_RS02325 WP_338997798.1 476794..477945(-) (recA) [Lactococcus formosensis strain M03102409 EE5d7]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGKQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGKLLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIESDEENEKEDAKPAKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918980 VNN28_RS02325 WP_338997798.1 476794..477945(-) (recA) [Lactococcus formosensis strain M03102409 EE5d7]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAGATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCAGCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGTAAGCAAGGCTTGCAAATTGCTGAGAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATCGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTAAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAAATTGGTCAGGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAAGTGATGAAGAAAATGAAAAAGAAGATGCTAAACCAGCAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

85.795

91.906

0.789
  recA Streptococcus pneumoniae Rx1

75.773

100

0.768
  recA Streptococcus pneumoniae D39

75.773

100

0.768
  recA Streptococcus pneumoniae R6

75.773

100

0.768
  recA Streptococcus pneumoniae TIGR4

75.773

100

0.768
  recA Streptococcus mitis NCTC 12261

76.302

100

0.765
  recA Streptococcus mitis SK321

76.042

100

0.762
  recA Streptococcus mutans UA159

76.712

95.3

0.731
  recA Streptococcus pyogenes NZ131

79.942

89.817

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

62.784

91.906

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

64.848

86.162

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

87.99

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.697

86.162

0.514
  recA Acinetobacter baumannii D1279779

56.977

89.817

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.56

89.556

0.507
  recA Glaesserella parasuis strain SC1401

56.725

89.295

0.507
  recA Acinetobacter baylyi ADP1

59.568

84.595

0.504
  recA Vibrio cholerae strain A1552

59.568

84.595

0.504
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

84.595

0.504
  recA Helicobacter pylori strain NCTC11637

57.44

87.728

0.504
  recA Helicobacter pylori 26695

57.44

87.728

0.504
  recA Neisseria gonorrhoeae strain FA1090

56.418

87.467

0.493
  recA Neisseria gonorrhoeae MS11

56.418

87.467

0.493
  recA Neisseria gonorrhoeae MS11

56.418

87.467

0.493
  recA Ralstonia pseudosolanacearum GMI1000

58.36

82.768

0.483
  recA Pseudomonas stutzeri DSM 10701

55.728

84.334

0.47