Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN48_RS08025 Genome accession   NZ_CP141723
Coordinates   1640966..1642117 (+) Length   383 a.a.
NCBI ID   WP_017369483.1    Uniprot ID   A0A9Q8Y2S1
Organism   Lactococcus formosensis strain PAQ-208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1635966..1647117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS08005 (VNN48_08000) - 1636671..1637975 (-) 1305 WP_407281068.1 PTS sugar transporter subunit IIC -
  VNN48_RS08010 (VNN48_08005) - 1637978..1638775 (-) 798 WP_252175552.1 tyrosine-protein phosphatase -
  VNN48_RS08015 (VNN48_08010) - 1639110..1639853 (+) 744 WP_279359101.1 MurR/RpiR family transcriptional regulator -
  VNN48_RS08020 (VNN48_08015) mutM 1640041..1640865 (+) 825 WP_213432233.1 DNA-formamidopyrimidine glycosylase -
  VNN48_RS08025 (VNN48_08020) recA 1640966..1642117 (+) 1152 WP_017369483.1 recombinase RecA Machinery gene
  VNN48_RS08030 (VNN48_08025) - 1642154..1643518 (-) 1365 WP_165711820.1 amino acid permease -
  VNN48_RS08035 (VNN48_08030) - 1643723..1644097 (+) 375 WP_017369481.1 YlbF family regulator -
  VNN48_RS08040 (VNN48_08035) - 1644081..1644437 (+) 357 WP_017369480.1 YlbG family protein -
  VNN48_RS08045 (VNN48_08040) - 1644496..1645014 (-) 519 WP_017369479.1 hypothetical protein -
  VNN48_RS08050 (VNN48_08045) - 1645143..1645739 (-) 597 WP_017369478.1 CYTH domain-containing protein -
  VNN48_RS08055 (VNN48_08050) - 1646056..1646736 (+) 681 WP_017369477.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40981.90 Da        Isoelectric Point: 5.0719

>NTDB_id=918945 VNN48_RS08025 WP_017369483.1 1640966..1642117(+) (recA) [Lactococcus formosensis strain PAQ-208]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIDSDEENEKEDAKPVKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918945 VNN48_RS08025 WP_017369483.1 1640966..1642117(+) (recA) [Lactococcus formosensis strain PAQ-208]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAAATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCAGCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGGGAACAAGGTTTACAAATTGCTGAGAAATTGATTGAGTCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATTGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAGATCGGTCAGGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGACAGTGATGAAGAAAATGAAAAAGAAGATGCTAAACCAGTAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.648

91.906

0.796
  recA Streptococcus mitis NCTC 12261

77.344

100

0.775
  recA Streptococcus pneumoniae Rx1

77.895

99.217

0.773
  recA Streptococcus pneumoniae D39

77.895

99.217

0.773
  recA Streptococcus pneumoniae R6

77.895

99.217

0.773
  recA Streptococcus pneumoniae TIGR4

77.895

99.217

0.773
  recA Streptococcus mitis SK321

76.823

100

0.77
  recA Streptococcus mutans UA159

76.986

95.3

0.734
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

91.906

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

89.556

0.512
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Helicobacter pylori strain NCTC11637

58.036

87.728

0.509
  recA Helicobacter pylori 26695

58.036

87.728

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae strain FA1090

57.015

87.467

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475