Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN39_RS02325 Genome accession   NZ_CP141721
Coordinates   476803..477954 (-) Length   383 a.a.
NCBI ID   WP_339007198.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471803..482954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS02295 (VNN39_02295) - 472185..472865 (-) 681 WP_338997796.1 GTP pyrophosphokinase family protein -
  VNN39_RS02300 (VNN39_02300) - 473182..473778 (+) 597 WP_017369478.1 CYTH domain-containing protein -
  VNN39_RS02305 (VNN39_02305) - 473908..474426 (+) 519 WP_017369479.1 hypothetical protein -
  VNN39_RS02310 (VNN39_02310) - 474485..474841 (-) 357 WP_338997797.1 YlbG family protein -
  VNN39_RS02315 (VNN39_02315) - 474825..475199 (-) 375 WP_017369481.1 YlbF family regulator -
  VNN39_RS02320 (VNN39_02320) - 475404..476768 (+) 1365 WP_165711820.1 amino acid permease -
  VNN39_RS02325 (VNN39_02325) recA 476803..477954 (-) 1152 WP_339007198.1 recombinase RecA Machinery gene
  VNN39_RS02330 (VNN39_02330) mutM 478055..478879 (-) 825 WP_096368741.1 DNA-formamidopyrimidine glycosylase -
  VNN39_RS02335 (VNN39_02335) - 479067..479810 (-) 744 WP_213495719.1 SIS domain-containing protein -
  VNN39_RS02340 (VNN39_02340) - 480145..480942 (+) 798 WP_338997799.1 tyrosine-protein phosphatase -
  VNN39_RS02345 (VNN39_02345) - 480945..482252 (+) 1308 WP_213495724.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40966.93 Da        Isoelectric Point: 5.2877

>NTDB_id=918888 VNN39_RS02325 WP_339007198.1 476803..477954(-) (recA) [Lactococcus formosensis strain M04020401 EE5e5]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGKLLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIESDEENEKEDAKPAKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918888 VNN39_RS02325 WP_339007198.1 476803..477954(-) (recA) [Lactococcus formosensis strain M04020401 EE5e5]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAGATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCAGCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGTGAGCAAGGCTTGCAAATTGCTGAGAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATCGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTAAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAAATTGGTCAGGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAAGTGATGAAGAAAATGAAAAAGAAGATGCTAAACCAGCAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.08

91.906

0.791
  recA Streptococcus pneumoniae Rx1

76.031

100

0.77
  recA Streptococcus pneumoniae D39

76.031

100

0.77
  recA Streptococcus pneumoniae R6

76.031

100

0.77
  recA Streptococcus pneumoniae TIGR4

76.031

100

0.77
  recA Streptococcus mitis NCTC 12261

76.562

100

0.768
  recA Streptococcus mitis SK321

76.302

100

0.765
  recA Streptococcus mutans UA159

76.986

95.3

0.734
  recA Streptococcus pyogenes NZ131

80.233

89.817

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

63.068

91.906

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

65.152

86.162

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

86.162

0.517
  recA Acinetobacter baumannii D1279779

57.267

89.817

0.514
  recA Glaesserella parasuis strain SC1401

57.018

89.295

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.851

89.556

0.509
  recA Acinetobacter baylyi ADP1

59.877

84.595

0.507
  recA Vibrio cholerae strain A1552

59.877

84.595

0.507
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

84.595

0.507
  recA Helicobacter pylori strain NCTC11637

57.738

87.728

0.507
  recA Helicobacter pylori 26695

57.738

87.728

0.507
  recA Neisseria gonorrhoeae strain FA1090

56.716

87.467

0.496
  recA Neisseria gonorrhoeae MS11

56.716

87.467

0.496
  recA Neisseria gonorrhoeae MS11

56.716

87.467

0.496
  recA Ralstonia pseudosolanacearum GMI1000

58.675

82.768

0.486
  recA Pseudomonas stutzeri DSM 10701

55.864

84.595

0.473