Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN47_RS08440 Genome accession   NZ_CP141709
Coordinates   1651867..1653018 (+) Length   383 a.a.
NCBI ID   WP_176490008.1    Uniprot ID   A0A6L2ZST4
Organism   Lactococcus garvieae strain VC13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1646867..1658018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS08430 (VNN47_08395) era 1649836..1650747 (+) 912 WP_176490010.1 GTPase Era -
  VNN47_RS08435 (VNN47_08400) mutM 1650942..1651763 (+) 822 WP_407350232.1 DNA-formamidopyrimidine glycosylase -
  VNN47_RS08440 (VNN47_08405) recA 1651867..1653018 (+) 1152 WP_176490008.1 recombinase RecA Machinery gene
  VNN47_RS08445 (VNN47_08410) - 1653053..1654417 (-) 1365 WP_042217625.1 amino acid permease -
  VNN47_RS08450 (VNN47_08415) - 1654624..1654998 (+) 375 WP_407350233.1 YlbF family regulator -
  VNN47_RS08455 (VNN47_08420) - 1654982..1655338 (+) 357 WP_003133842.1 YlbG family protein -
  VNN47_RS08460 (VNN47_08425) - 1655397..1655915 (-) 519 WP_074750709.1 dithiol-disulfide isomerase -
  VNN47_RS08465 (VNN47_08430) - 1656044..1656640 (-) 597 WP_003133845.1 CYTH domain-containing protein -
  VNN47_RS08470 (VNN47_08435) - 1656958..1657638 (+) 681 WP_016171021.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40893.84 Da        Isoelectric Point: 5.1687

>NTDB_id=918675 VNN47_RS08440 WP_176490008.1 1651867..1653018(+) (recA) [Lactococcus garvieae strain VC13]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIEGDEADEKEEVKPAKANEKAKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918675 VNN47_RS08440 WP_176490008.1 1651867..1653018(+) (recA) [Lactococcus garvieae strain VC13]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCGTTAAAAGATGC
GCTTGACCTTATTGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCGAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTAACACCACGTGCCGAAATTGACGGCGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATCGAAGAAGGCTCCGGTGATAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
TAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGCGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGGGCTTGGTTCTCTTATAATGACGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATTGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAGGTGATGAAGCGGATGAAAAAGAAGAGGTTAAACCAGCAAAAGCAAATGAAAAAGCAAAAGTTGAAGCTGCTG
GCGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L2ZST4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus mitis NCTC 12261

77.895

99.217

0.773
  recA Streptococcus mitis SK321

77.895

99.217

0.773
  recA Streptococcus pneumoniae Rx1

77.632

99.217

0.77
  recA Streptococcus pneumoniae D39

77.632

99.217

0.77
  recA Streptococcus pneumoniae R6

77.632

99.217

0.77
  recA Streptococcus pneumoniae TIGR4

77.632

99.217

0.77
  recA Streptococcus mutans UA159

77.049

95.561

0.736
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.352

91.906

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

89.556

0.52
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Helicobacter pylori 26695

58.359

85.901

0.501
  recA Helicobacter pylori strain NCTC11637

58.359

85.901

0.501
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae strain FA1090

59.119

83.029

0.491
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475