Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN37_RS02875 Genome accession   NZ_CP141707
Coordinates   559616..560767 (-) Length   383 a.a.
NCBI ID   WP_339000611.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 554616..565767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS02845 (VNN37_02845) - 554996..555676 (-) 681 WP_264308358.1 GTP pyrophosphokinase family protein -
  VNN37_RS02850 (VNN37_02850) - 555994..556590 (+) 597 WP_003133845.1 CYTH domain-containing protein -
  VNN37_RS02855 (VNN37_02855) - 556719..557237 (+) 519 WP_339000607.1 dithiol-disulfide isomerase -
  VNN37_RS02860 (VNN37_02860) - 557296..557652 (-) 357 WP_339000609.1 YlbG family protein -
  VNN37_RS02865 (VNN37_02865) - 557636..558010 (-) 375 WP_003133841.1 YlbF family regulator -
  VNN37_RS02870 (VNN37_02870) - 558217..559581 (+) 1365 WP_042217625.1 amino acid permease -
  VNN37_RS02875 (VNN37_02875) recA 559616..560767 (-) 1152 WP_339000611.1 recombinase RecA Machinery gene
  VNN37_RS02880 (VNN37_02880) mutM 560871..561692 (-) 822 WP_339000613.1 DNA-formamidopyrimidine glycosylase -
  VNN37_RS02885 (VNN37_02885) era 561887..562798 (-) 912 WP_003133835.1 GTPase Era -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40926.82 Da        Isoelectric Point: 5.0719

>NTDB_id=918620 VNN37_RS02875 WP_339000611.1 559616..560767(-) (recA) [Lactococcus garvieae strain M21102102]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIEGDESDEKEDVKPAKADEKAKVEATGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918620 VNN37_RS02875 WP_339000611.1 559616..560767(-) (recA) [Lactococcus garvieae strain M21102102]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCGTTAAAAGATGC
GCTTGACCTTATCGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCGAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTGACACCACGTGCTGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATCGAAGAAGGTTCCGGTGACAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
CAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGCGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGAGCTTGGTTCTCTTATAATGATGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAGGTGATGAATCGGATGAAAAAGAAGATGTTAAACCAGCAAAAGCAGATGAAAAAGCAAAAGTTGAAGCTACTG
GCGTAGAAGAAATCGAGCTGGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus mitis NCTC 12261

77.895

99.217

0.773
  recA Streptococcus mitis SK321

77.895

99.217

0.773
  recA Streptococcus pneumoniae Rx1

77.895

99.217

0.773
  recA Streptococcus pneumoniae D39

77.895

99.217

0.773
  recA Streptococcus pneumoniae R6

77.895

99.217

0.773
  recA Streptococcus pneumoniae TIGR4

77.895

99.217

0.773
  recA Streptococcus mutans UA159

77.322

95.561

0.739
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

91.906

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.726

89.556

0.517
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Helicobacter pylori 26695

58.359

85.901

0.501
  recA Helicobacter pylori strain NCTC11637

58.359

85.901

0.501
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae strain FA1090

59.119

83.029

0.491
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475