Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN43_RS02715 Genome accession   NZ_CP141685
Coordinates   546701..547852 (-) Length   383 a.a.
NCBI ID   WP_206888187.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-69 HC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541701..552852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN43_RS02685 (VNN43_02685) - 542080..542760 (-) 681 WP_019291383.1 GTP pyrophosphokinase family protein -
  VNN43_RS02690 (VNN43_02690) - 543078..543674 (+) 597 WP_003133845.1 CYTH domain-containing protein -
  VNN43_RS02695 (VNN43_02695) - 543804..544322 (+) 519 WP_019291385.1 hypothetical protein -
  VNN43_RS02700 (VNN43_02700) - 544383..544739 (-) 357 WP_019291386.1 YlbG family protein -
  VNN43_RS02705 (VNN43_02705) - 544723..545097 (-) 375 WP_191672875.1 YlbF family regulator -
  VNN43_RS02710 (VNN43_02710) - 545302..546666 (+) 1365 WP_019291388.1 amino acid permease -
  VNN43_RS02715 (VNN43_02715) recA 546701..547852 (-) 1152 WP_206888187.1 recombinase RecA Machinery gene
  VNN43_RS02720 (VNN43_02720) mutM 547953..548777 (-) 825 WP_206888184.1 DNA-formamidopyrimidine glycosylase -
  VNN43_RS02725 (VNN43_02725) era 548968..549879 (-) 912 WP_061413835.1 GTPase Era -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40995.89 Da        Isoelectric Point: 5.0750

>NTDB_id=917990 VNN43_RS02715 WP_206888187.1 546701..547852(-) (recA) [Lactococcus petauri strain R21-69 HC]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIESDEENEREDAKPAKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=917990 VNN43_RS02715 WP_206888187.1 546701..547852(-) (recA) [Lactococcus petauri strain R21-69 HC]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAGAAAGCCTTAAAAGATGC
GCTTGACCTTATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCAGCGAGTCAAAAAGTTCAAGTCA
CAAGTTCAGGAAGTTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCTAAAGGTCGTATCATCGAAATCTACGGT
CCAGAAAGTTCTGGTAAGACTACGGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCTGAAGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCCGTCTATGCTGCAGCGATTGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAGCAAGGCTTGCAAATTGCTGAGAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGTGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTTTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATTGGTAAGTTGACGAAGATTAAGGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAGATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAAGTGATGAAGAAAATGAAAGAGAAGATGCTAAACCAGCAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus pneumoniae Rx1

77.632

99.217

0.77
  recA Streptococcus pneumoniae D39

77.632

99.217

0.77
  recA Streptococcus pneumoniae R6

77.632

99.217

0.77
  recA Streptococcus pneumoniae TIGR4

77.632

99.217

0.77
  recA Streptococcus mitis NCTC 12261

76.823

100

0.77
  recA Streptococcus mitis SK321

76.562

100

0.768
  recA Streptococcus mutans UA159

76.986

95.3

0.734
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.352

91.906

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Acinetobacter baumannii D1279779

57.895

89.295

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

89.556

0.512
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Helicobacter pylori strain NCTC11637

58.036

87.728

0.509
  recA Helicobacter pylori 26695

58.036

87.728

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Neisseria gonorrhoeae strain FA1090

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475