Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U8C12_RS13600 Genome accession   NZ_CP141586
Coordinates   2800714..2801907 (-) Length   397 a.a.
NCBI ID   WP_003589104.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain HP-B1337     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2795714..2806907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8C12_RS13575 (U8C12_13575) - 2795927..2796613 (-) 687 WP_003567833.1 histidine phosphatase family protein -
  U8C12_RS13580 (U8C12_13580) - 2796658..2797470 (-) 813 WP_003567836.1 Cof-type HAD-IIB family hydrolase -
  U8C12_RS13585 (U8C12_13585) - 2797567..2798049 (+) 483 WP_003567838.1 ribonuclease H -
  U8C12_RS13590 (U8C12_13590) - 2798055..2798957 (-) 903 WP_003567840.1 LysR family transcriptional regulator -
  U8C12_RS13595 (U8C12_13595) - 2799207..2800409 (+) 1203 WP_003567842.1 PLP-dependent aminotransferase family protein -
  U8C12_RS13600 (U8C12_13600) recA 2800714..2801907 (-) 1194 WP_003589104.1 recombinase RecA Machinery gene
  U8C12_RS13605 (U8C12_13605) - 2802307..2803005 (+) 699 WP_003567846.1 DUF554 domain-containing protein -
  U8C12_RS13610 (U8C12_13610) - 2803163..2803636 (-) 474 WP_003567848.1 hypothetical protein -
  U8C12_RS13615 (U8C12_13615) - 2803831..2804169 (-) 339 WP_003658790.1 hypothetical protein -
  U8C12_RS13620 (U8C12_13620) - 2804218..2806200 (-) 1983 WP_003589108.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42940.67 Da        Isoelectric Point: 5.2792

>NTDB_id=917521 U8C12_RS13600 WP_003589104.1 2800714..2801907(-) (recA) [Lacticaseibacillus paracasei strain HP-B1337]
MAKKTTAKNDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDDKKDDQASADKKTEKTTTTDTEKKAGKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=917521 U8C12_RS13600 WP_003589104.1 2800714..2801907(-) (recA) [Lacticaseibacillus paracasei strain HP-B1337]
ATGGCTAAGAAAACGACCGCAAAGAATGATAATACTAAATCCGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCAGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCACGTGGCCGAATCGTTGAAGTCTATGGTCCT
GAAAGTACCGGGAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGACCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTTGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGTGCCATCGGGGATAGTCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAATAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTAACACCGGGCGGCCGTGCCTTGAAATTCTATGCGTCTGTACGGATTGAAGTCAAGCGT
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGGATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGACGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AACGCATCTCACTACTTGGATGAACATCCGGAAATTTCTAAGGAAATCGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAGCCGATGAGAAGCAGGATGATAAGAAAGACGATCAGGCATCTGCTGATAAAAAGACCGAAAAGACAA
CGACCACTGATACTGAAAAGAAAGCCGGCAAGAAAGATGACCCTGCCAGCTTCGGGGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

57.143

95.214

0.544
  recA Streptococcus mitis NCTC 12261

57.143

95.214

0.544
  recA Streptococcus pneumoniae TIGR4

57.493

92.443

0.531
  recA Streptococcus pneumoniae D39

57.493

92.443

0.531
  recA Streptococcus pneumoniae R6

57.493

92.443

0.531
  recA Streptococcus pneumoniae Rx1

57.493

92.443

0.531
  recA Streptococcus mutans UA159

56.568

93.955

0.531
  recA Streptococcus pyogenes NZ131

59.71

86.902

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Pseudomonas stutzeri DSM 10701

55.942

86.902

0.486
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.598

85.894

0.486
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.672

89.169

0.479
  recA Glaesserella parasuis strain SC1401

53.736

87.657

0.471
  recA Acinetobacter baylyi ADP1

54.678

86.146

0.471
  recA Acinetobacter baumannii D1279779

53.623

86.902

0.466
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.093

0.456
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Vibrio cholerae strain A1552

53.211

82.368

0.438
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.211

82.368

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.469

81.612

0.428
  recA Helicobacter pylori strain NCTC11637

51.524

82.62

0.426
  recA Helicobacter pylori 26695

51.524

82.62

0.426