Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U4960_RS07050 Genome accession   NZ_CP141285
Coordinates   1378150..1379211 (+) Length   353 a.a.
NCBI ID   WP_324262857.1    Uniprot ID   -
Organism   Altererythrobacter sp. H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1373150..1384211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4960_RS07040 (U4960_07040) - 1374850..1376371 (+) 1522 Protein_1392 DUF4139 domain-containing protein -
  U4960_RS07045 (U4960_07045) - 1376387..1378024 (+) 1638 WP_324262856.1 hypothetical protein -
  U4960_RS07050 (U4960_07050) recA 1378150..1379211 (+) 1062 WP_324262857.1 recombinase RecA Machinery gene
  U4960_RS07055 (U4960_07055) - 1379575..1380402 (+) 828 WP_324262858.1 class I SAM-dependent methyltransferase -
  U4960_RS07060 (U4960_07060) alaS 1380475..1383150 (+) 2676 WP_324262859.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37826.47 Da        Isoelectric Point: 5.1979

>NTDB_id=916904 U4960_RS07050 WP_324262857.1 1378150..1379211(+) (recA) [Altererythrobacter sp. H2]
MAAQLKLVEGKEVNAERQKALDAALAQIDRAFGKGSAMKLGSKEAMQVEVIPTGSLGLDIALGVGGLPKGRVIEVYGPES
SGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAAL
VPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTG
QIKDRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSIRIGQGRENAKQFL
KENTELCDKLEAAIRGRTDVVAEEMMAGPDAED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=916904 U4960_RS07050 WP_324262857.1 1378150..1379211(+) (recA) [Altererythrobacter sp. H2]
ATGGCTGCGCAACTCAAGCTGGTGGAAGGCAAGGAAGTGAACGCAGAACGGCAGAAGGCGCTCGATGCAGCGCTCGCGCA
GATTGACCGTGCATTCGGCAAGGGCTCGGCGATGAAGCTGGGCAGCAAGGAAGCGATGCAGGTGGAGGTAATCCCCACCG
GTTCGCTCGGGCTCGACATTGCGCTTGGCGTGGGCGGCTTGCCCAAGGGCCGGGTGATCGAGGTCTATGGCCCGGAAAGC
TCCGGCAAGACGACGCTGGCCCTGCATGTGATTGCCGAGGCGCAGAAGGCTGGCGGCACCGCTGCCTTCGTCGATGCCGA
GCACGCGCTCGACCCGGTCTATGCCAAGAAGCTGGGGGTCGACATTGACGAGCTGATCGTGTCGCAGCCCGATACCGGCG
AACAGGCGCTGGAAATCGTGGATACCCTGGTCCGCTCCAACGCGATCGACGTGCTGGTGGTCGACTCGGTTGCCGCCCTG
GTTCCGCGTGCGGAGATCGAGGGCGAAATGGGTGACAGCCATGTCGGCCTCCAGGCCCGCCTGATGAGCCAGAGCCTGCG
CAAGCTGACCGGCTCGATCAGCCGCTCCAAGTGCATGGTGATCTTCATCAACCAGCTGCGGATGAAGATCGGCGTGATGT
ATGGCAACCCGGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTATGCCAGTGTCCGGCTCGACATTCGCCGCACCGGG
CAGATCAAGGATCGTGACGAGATCGTCGGCAACGCGACCCGGGTGAAGGTGGTCAAGAACAAGGTGGCCCCTCCGTTCAA
ACAGGTCGAATTCGACATCATGTATGGTGAAGGCATTTCCAAGATCGGCGAGATCCTCGATCTCGGGGTCAAGGCCGGGG
TGGTGGAGAAATCGGGCAGCTGGTTCAGCTACGATTCGATCCGGATCGGCCAGGGGCGCGAGAACGCCAAGCAGTTCCTC
AAGGAAAATACCGAACTTTGCGACAAGCTGGAAGCCGCCATCCGCGGCCGAACCGACGTTGTCGCCGAGGAGATGATGGC
CGGTCCTGACGCGGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.862

96.601

0.646
  recA Ralstonia pseudosolanacearum GMI1000

70.588

91.501

0.646
  recA Glaesserella parasuis strain SC1401

69.325

92.351

0.64
  recA Vibrio cholerae strain A1552

66.568

95.751

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.568

95.751

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

92.918

0.626
  recA Neisseria gonorrhoeae MS11

68.847

90.935

0.626
  recA Neisseria gonorrhoeae MS11

68.847

90.935

0.626
  recA Neisseria gonorrhoeae strain FA1090

68.847

90.935

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

68.224

90.935

0.62
  recA Acinetobacter baylyi ADP1

64.97

94.618

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

96.884

0.612
  recA Acinetobacter baumannii D1279779

66.254

91.501

0.606
  recA Streptococcus pneumoniae Rx1

59.053

100

0.601
  recA Streptococcus pneumoniae R6

59.053

100

0.601
  recA Streptococcus pneumoniae D39

59.053

100

0.601
  recA Streptococcus pneumoniae TIGR4

59.053

100

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

61.877

96.601

0.598
  recA Helicobacter pylori strain NCTC11637

62.242

96.034

0.598
  recA Helicobacter pylori 26695

62.242

96.034

0.598
  recA Streptococcus pyogenes NZ131

60.411

96.601

0.584
  recA Streptococcus mitis NCTC 12261

62.006

93.201

0.578
  recA Streptococcus mutans UA159

58

99.15

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.597

94.901

0.575
  recA Streptococcus mitis SK321

61.702

93.201

0.575
  recA Lactococcus lactis subsp. cremoris KW2

59.878

93.201

0.558