Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U3649_RS15540 Genome accession   NZ_CP141262
Coordinates   3577359..3578408 (-) Length   349 a.a.
NCBI ID   WP_407352209.1    Uniprot ID   -
Organism   Luteimonas sp. R10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3572359..3583408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3649_RS15525 (U3649_15425) csrA 3573642..3573845 (-) 204 WP_407352206.1 carbon storage regulator CsrA -
  U3649_RS15530 (U3649_15430) alaS 3573992..3576622 (-) 2631 WP_407352207.1 alanine--tRNA ligase -
  U3649_RS15535 (U3649_15435) - 3576776..3577273 (-) 498 WP_407352208.1 regulatory protein RecX -
  U3649_RS15540 (U3649_15440) recA 3577359..3578408 (-) 1050 WP_407352209.1 recombinase RecA Machinery gene
  U3649_RS15545 (U3649_15445) lexA 3578611..3579264 (-) 654 WP_407352210.1 transcriptional repressor LexA -
  U3649_RS15550 (U3649_15450) - 3579290..3579787 (-) 498 WP_407352211.1 CinA family protein -
  U3649_RS15555 (U3649_15455) - 3579911..3582550 (-) 2640 WP_407352212.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37619.23 Da        Isoelectric Point: 5.3714

>NTDB_id=916507 U3649_RS15540 WP_407352209.1 3577359..3578408(-) (recA) [Luteimonas sp. R10]
MDENKKRALSAALTQIEKQFGKGSVMRMGDGTAQAVASIPTGSLQLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
QCQKAGGTAAFIDAEHALDPGYATKLGVNIDDLLVSQPDTGEQALEIADMLVRSNAVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVFFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGKERIGQGKENARQYLKENPEVAAKL
EAALRAQFVPAEVKPEERKEDVEEDGVEA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=916507 U3649_RS15540 WP_407352209.1 3577359..3578408(-) (recA) [Luteimonas sp. R10]
ATGGACGAGAACAAGAAGCGCGCGCTGTCCGCCGCCCTGACCCAGATCGAGAAGCAGTTCGGCAAGGGTTCGGTGATGCG
CATGGGCGACGGCACCGCGCAGGCGGTGGCGTCGATCCCGACCGGCTCGTTGCAGCTCGACATCGCGCTCGGCATCGGTG
GCCTGCCCAAGGGGCGCGTGGTCGAGATCTACGGCCCCGAGTCCTCCGGCAAGACCACGCTGACCCTGCAGACGATCGCG
CAGTGCCAGAAGGCCGGCGGCACCGCTGCATTCATCGACGCCGAGCACGCGCTGGACCCGGGCTATGCCACCAAGCTGGG
CGTCAACATCGACGACCTGCTGGTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CCAATGCGGTCGACATGGTGGTGATCGACTCGGTCGCAGCGCTGACGCCCAGGGCGGAGATCGAGGGCGAGATGGGCGAC
CAGCTTCCCGGCCTGCAGGCGCGGTTGATGAGCCAGGCGCTGCGCAAACTCACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGTTCTTCATCAACCAGTTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAGACCACCACCGGAGGCA
ACGCGCTCAAGTTCTATGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCGTCACCGAGATCCTGTACGGCGA
GGGCATCAGCCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACGGCAAGGAACGCATCGGCCAGGGCAAGGAGAACGCGCGCCAGTACCTGAAGGAGAACCCCGAGGTCGCCGCCAAGCTG
GAGGCGGCGTTGCGTGCCCAGTTCGTGCCGGCCGAAGTGAAGCCGGAGGAAAGGAAGGAAGACGTGGAAGAGGACGGTGT
CGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.725

98.854

0.699
  recA Acinetobacter baumannii D1279779

70.64

98.567

0.696
  recA Pseudomonas stutzeri DSM 10701

73.556

94.269

0.693
  recA Vibrio cholerae strain A1552

71.687

95.129

0.682
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.687

95.129

0.682
  recA Ralstonia pseudosolanacearum GMI1000

70.909

94.556

0.67
  recA Glaesserella parasuis strain SC1401

68.731

92.55

0.636
  recA Neisseria gonorrhoeae MS11

67.378

93.983

0.633
  recA Neisseria gonorrhoeae MS11

67.378

93.983

0.633
  recA Neisseria gonorrhoeae strain FA1090

67.378

93.983

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

93.123

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

61.791

95.989

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

95.415

0.585
  recA Streptococcus mitis SK321

59.302

98.567

0.585
  recA Streptococcus mutans UA159

58.382

99.14

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

93.123

0.579
  recA Helicobacter pylori 26695

61.538

93.123

0.573
  recA Helicobacter pylori strain NCTC11637

61.538

93.123

0.573
  recA Streptococcus pneumoniae TIGR4

60.671

93.983

0.57
  recA Streptococcus pneumoniae Rx1

60.671

93.983

0.57
  recA Streptococcus pneumoniae D39

60.671

93.983

0.57
  recA Streptococcus pneumoniae R6

60.671

93.983

0.57
  recA Streptococcus mitis NCTC 12261

60.366

93.983

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.271

94.269

0.559
  recA Streptococcus pyogenes NZ131

59.091

94.556

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.509

93.41

0.556