Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SOY78_RS08985 Genome accession   NZ_CP141211
Coordinates   1961465..1962529 (-) Length   354 a.a.
NCBI ID   WP_036384235.1    Uniprot ID   -
Organism   Micrococcus sp. HOU01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956465..1967529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOY78_RS08965 (SOY78_08965) dapF 1956973..1957926 (-) 954 WP_036336799.1 diaminopimelate epimerase -
  SOY78_RS08970 (SOY78_08970) miaA 1957936..1958874 (-) 939 WP_036336805.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SOY78_RS08975 (SOY78_08975) miaB 1958874..1960421 (-) 1548 WP_020628159.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  SOY78_RS08980 (SOY78_08980) - 1960461..1961468 (-) 1008 WP_036384237.1 regulatory protein RecX -
  SOY78_RS08985 (SOY78_08985) recA 1961465..1962529 (-) 1065 WP_036384235.1 recombinase RecA Machinery gene
  SOY78_RS08990 (SOY78_08990) - 1962741..1962959 (-) 219 WP_002856506.1 DUF3046 domain-containing protein -
  SOY78_RS08995 (SOY78_08995) - 1963058..1963459 (-) 402 WP_036315027.1 helix-turn-helix domain-containing protein -
  SOY78_RS09000 (SOY78_09000) - 1963567..1964850 (-) 1284 WP_135039869.1 hypothetical protein -
  SOY78_RS09005 (SOY78_09005) - 1964931..1965458 (-) 528 WP_036384231.1 CinA family protein -
  SOY78_RS09010 (SOY78_09010) - 1965463..1966077 (-) 615 WP_036384229.1 CDP-alcohol phosphatidyltransferase family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37746.02 Da        Isoelectric Point: 4.9528

>NTDB_id=916351 SOY78_RS08985 WP_036384235.1 1961465..1962529(-) (recA) [Micrococcus sp. HOU01]
MSKVTDREKALEAALAQIDKQFGKGSVMRLGDQTQAPVEVIPTGSVAMDVALGIGGLPRGRVVEIYGPESSGKTTLALHA
VANAQRNGGIAAFIDAEHALDPVYARQLGVDTDALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVG
NRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQGKENARRFLKDNPDLANEI
EERILTKLGIGVAPEAEDDEAPALTAVPGDTAVG

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=916351 SOY78_RS08985 WP_036384235.1 1961465..1962529(-) (recA) [Micrococcus sp. HOU01]
ATGAGCAAGGTGACGGATCGCGAGAAGGCCCTCGAGGCCGCTCTCGCCCAGATCGACAAGCAGTTCGGCAAGGGTTCCGT
CATGCGGCTGGGGGACCAGACCCAGGCACCCGTCGAGGTCATCCCCACGGGCTCGGTGGCCATGGACGTGGCCCTGGGCA
TCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAGATCTACGGCCCGGAGTCCTCGGGCAAGACCACCCTGGCCCTGCACGCG
GTGGCCAACGCGCAGCGCAACGGCGGCATCGCGGCCTTCATCGACGCGGAGCACGCCCTGGACCCGGTCTACGCCCGCCA
GCTCGGGGTGGACACGGACGCCCTGCTGGTCAGCCAGCCGGACACCGGCGAGCAGGCCCTGGAGATCATGGACATGCTCG
TCTCCTCGGGCACCCTGGACATCGTCGTCATCGACTCCGTGGCCGCGCTGACCCCGCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCCCGCCTCATGTCCCAGGCGCTGCGCAAGGTGACCGGCCGCCTGCACCAGACCAA
GACCACGGCCATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCTCCCCGGAGACCACCACGGGCGGCA
AGGCGCTCAAGTTCTATGCGTCCGTGCGCATCGACGTCCGCCGCATCGAGACCCTCAAGGAGGCCGGCAACCCCGTCGGC
AACCGCACCCGCGTGAAGATCGTCAAGAACAAGATGGCCCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGGGT
CGGCATCTCCCGCGAGGGCGGCCTGATCGACATGGGTGTCGAGGAGGGCATCGTCAAGAAGTCCGGCGCGTGGTTCACCT
ATGACGGGGACCAGCTCGGGCAGGGCAAGGAGAACGCCCGTCGCTTCCTCAAGGACAACCCGGACCTCGCCAACGAGATC
GAGGAGCGCATCCTCACGAAGCTCGGCATCGGCGTGGCCCCGGAGGCCGAGGACGACGAGGCCCCGGCCCTGACCGCGGT
TCCGGGGGACACCGCCGTCGGATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.743

96.61

0.616
  recA Acinetobacter baylyi ADP1

63.557

96.893

0.616
  recA Pseudomonas stutzeri DSM 10701

63.905

95.48

0.61
  recA Neisseria gonorrhoeae MS11

66.25

90.395

0.599
  recA Neisseria gonorrhoeae MS11

66.25

90.395

0.599
  recA Neisseria gonorrhoeae strain FA1090

66.25

90.395

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.908

95.198

0.599
  recA Ralstonia pseudosolanacearum GMI1000

64.329

92.655

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.373

0.593
  recA Vibrio cholerae strain A1552

64.89

90.113

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.89

90.113

0.585
  recA Helicobacter pylori strain NCTC11637

63.385

91.808

0.582
  recA Helicobacter pylori 26695

63.385

91.808

0.582
  recA Streptococcus pyogenes NZ131

58.857

98.87

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

93.22

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

92.938

0.576
  recA Streptococcus mitis NCTC 12261

58.166

98.588

0.573
  recA Streptococcus mitis SK321

58.166

98.588

0.573
  recA Glaesserella parasuis strain SC1401

63.043

90.96

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.094

92.938

0.568
  recA Streptococcus mutans UA159

59.878

92.938

0.556
  recA Streptococcus pneumoniae Rx1

59.878

92.938

0.556
  recA Streptococcus pneumoniae D39

59.878

92.938

0.556
  recA Streptococcus pneumoniae R6

59.878

92.938

0.556
  recA Streptococcus pneumoniae TIGR4

59.878

92.938

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

92.373

0.548