Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SFB89_RS11670 Genome accession   NZ_CP140614
Coordinates   2324519..2325541 (-) Length   340 a.a.
NCBI ID   WP_331776089.1    Uniprot ID   -
Organism   Sulfurospirillum sp. 1612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319519..2330541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFB89_RS11645 (SFB89_11645) - 2319691..2320869 (+) 1179 WP_331774861.1 cation:proton antiporter -
  SFB89_RS11650 (SFB89_11650) - 2320990..2322267 (+) 1278 WP_331774862.1 citrate synthase -
  SFB89_RS11655 (SFB89_11655) - 2322270..2322941 (-) 672 WP_331774863.1 AMIN domain-containing protein -
  SFB89_RS11660 (SFB89_11660) - 2322978..2323247 (-) 270 WP_331774864.1 septum formation initiator -
  SFB89_RS11665 (SFB89_11665) eno 2323254..2324522 (-) 1269 WP_331774865.1 phosphopyruvate hydratase -
  SFB89_RS11670 (SFB89_11670) recA 2324519..2325541 (-) 1023 WP_331776089.1 recombinase RecA Machinery gene
  SFB89_RS11675 (SFB89_11675) - 2325731..2326594 (+) 864 WP_331774866.1 MqnA/MqnD/SBP family protein -
  SFB89_RS11680 (SFB89_11680) fliQ 2326596..2326862 (+) 267 WP_331774867.1 flagellar biosynthesis protein FliQ -
  SFB89_RS11685 (SFB89_11685) - 2326862..2327644 (+) 783 WP_331774868.1 UDP-N-acetylmuramate dehydrogenase -
  SFB89_RS11690 (SFB89_11690) tsaD 2327798..2328793 (-) 996 WP_331774869.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36676.16 Da        Isoelectric Point: 4.8173

>NTDB_id=914885 SFB89_RS11670 WP_331776089.1 2324519..2325541(-) (recA) [Sulfurospirillum sp. 1612]
MDENKQKAMDLAIKQIDKAFGKGSLVRLGDKVIEPIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLALQITG
EAQKNGSICAFVDAEHALDVKYASNLGVDVENLFVSQPDFGEQALDIVETLVRSGAVDVIVVDSVAALTPKSEIEGDMGD
THVGLQARLMSQALRKLTGVVSKMGVTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQSDEQIGN
RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGEIVDYGVKLDIVDKSGAWFSYGEKRLGQGRENVKALLKEDKELAAELE
DKIKEAMGMTPINIIEEIEE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=914885 SFB89_RS11670 WP_331776089.1 2324519..2325541(-) (recA) [Sulfurospirillum sp. 1612]
ATCGACGAAAACAAACAAAAAGCAATGGACCTGGCCATTAAGCAAATCGACAAAGCTTTTGGTAAAGGGTCGCTTGTGCG
ATTAGGTGACAAGGTAATCGAGCCCATCGATTCTATCAGTACGGGTTCTTTAGGATTGGATTTGGCTCTTGGTATCGGGG
GCGTTCCAAAAGGAAGAATAATCGAAATTTATGGACCTGAGAGTTCAGGGAAAACAACCCTCGCGCTGCAAATTACCGGA
GAAGCTCAGAAAAATGGCAGCATTTGTGCTTTTGTGGATGCAGAACATGCTCTGGATGTAAAATATGCCAGCAATTTAGG
TGTGGATGTGGAGAACCTTTTTGTTTCACAGCCTGATTTTGGTGAGCAAGCACTTGATATTGTTGAAACATTAGTGAGAA
GTGGTGCTGTTGATGTGATCGTGGTTGACTCGGTTGCGGCATTGACGCCAAAAAGTGAGATTGAAGGGGATATGGGCGAT
ACCCATGTAGGACTTCAAGCCCGACTCATGAGTCAAGCCTTGCGTAAATTAACAGGGGTTGTCAGTAAAATGGGTGTGAC
GGTGATTTTCATCAACCAAATTCGTATGAAAATTGGTACGATGGGATATGGCTCTCCTGAGACGACAACAGGGGGAAATG
CTTTGAAATTTTATGCCTCTGTTCGGATTGATGTGCGAAAAATCGCGACATTAAAACAAAGTGATGAGCAAATCGGTAAC
CGTGTCAAAGCCAAAGTCATCAAAAACAAAGTGGCTCCGCCATTTCGTCAAGCGGAGTTTGATATCATGTTCGGTGAAGG
TATCAGTAAAGAGGGTGAAATCGTCGATTACGGCGTGAAATTGGATATTGTTGACAAAAGTGGAGCCTGGTTTAGTTATG
GTGAAAAACGATTGGGGCAAGGACGTGAAAATGTCAAAGCACTTTTAAAAGAAGATAAAGAGTTAGCGGCAGAGTTAGAG
GATAAAATCAAAGAAGCGATGGGAATGACACCTATCAACATAATCGAGGAGATAGAGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

77.391

100

0.785
  recA Helicobacter pylori strain NCTC11637

77.101

100

0.782
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.812

96.765

0.753
  recA Pseudomonas stutzeri DSM 10701

63.063

97.941

0.618
  recA Neisseria gonorrhoeae strain FA1090

63.636

97.059

0.618
  recA Neisseria gonorrhoeae MS11

63.636

97.059

0.618
  recA Neisseria gonorrhoeae MS11

63.636

97.059

0.618
  recA Ralstonia pseudosolanacearum GMI1000

64.024

96.471

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

97.647

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

63.804

95.882

0.612
  recA Acinetobacter baumannii D1279779

61.176

100

0.612
  recA Acinetobacter baylyi ADP1

62.08

96.176

0.597
  recA Glaesserella parasuis strain SC1401

60.778

98.235

0.597
  recA Vibrio cholerae strain A1552

60.18

98.235

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.18

98.235

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

95.882

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

56.97

97.059

0.553
  recA Streptococcus pyogenes NZ131

56.364

97.059

0.547
  recA Streptococcus mitis SK321

55.927

96.765

0.541
  recA Lactococcus lactis subsp. cremoris KW2

55.927

96.765

0.541
  recA Streptococcus pneumoniae D39

55.623

96.765

0.538
  recA Streptococcus pneumoniae R6

55.623

96.765

0.538
  recA Streptococcus mitis NCTC 12261

55.623

96.765

0.538
  recA Streptococcus pneumoniae TIGR4

55.623

96.765

0.538
  recA Streptococcus pneumoniae Rx1

55.623

96.765

0.538
  recA Streptococcus mutans UA159

53.687

99.706

0.535