Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5R73_RS15180 Genome accession   NZ_CP140261
Coordinates   3335331..3336395 (-) Length   354 a.a.
NCBI ID   WP_071230651.1    Uniprot ID   -
Organism   Salinicola sp. LHM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3330331..3341395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R73_RS15165 (R5R73_15165) - 3330459..3331703 (-) 1245 WP_071230654.1 aspartate kinase -
  R5R73_RS15170 (R5R73_15170) alaS 3331778..3334381 (-) 2604 WP_071230653.1 alanine--tRNA ligase -
  R5R73_RS15175 (R5R73_15175) - 3334817..3335311 (-) 495 WP_071230652.1 regulatory protein RecX -
  R5R73_RS15180 (R5R73_15180) recA 3335331..3336395 (-) 1065 WP_071230651.1 recombinase RecA Machinery gene
  R5R73_RS15185 (R5R73_15185) - 3336575..3337105 (-) 531 WP_322527944.1 CinA family protein -
  R5R73_RS15190 (R5R73_15190) - 3337474..3338079 (+) 606 WP_110630345.1 hypothetical protein -
  R5R73_RS15195 (R5R73_15195) - 3338148..3339008 (-) 861 WP_322527945.1 universal stress protein -
  R5R73_RS15200 (R5R73_15200) - 3339076..3340563 (-) 1488 WP_322527946.1 SulP family inorganic anion transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37884.03 Da        Isoelectric Point: 4.9086

>NTDB_id=913320 R5R73_RS15180 WP_071230651.1 3335331..3336395(-) (recA) [Salinicola sp. LHM]
MAQDENRSKALNAALSQIDRQFGKGTVMRLGDTPRTAIPVVSTGSLGLDIALGVGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKDGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVTG
NETRVKVVKNKVAPPFRQSEFQILYGKGIYHAGEVIDLGVQCNLVDKAGAWYSYKGSKIGQGKANAAQYLEEHPETMTEI
EDQIRAQLLATPTTQEKAPEAAAAESDDANDSLL

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=913320 R5R73_RS15180 WP_071230651.1 3335331..3336395(-) (recA) [Salinicola sp. LHM]
ATGGCACAGGACGAAAACCGCAGCAAGGCACTCAATGCGGCTCTGTCACAGATCGATCGCCAATTCGGCAAAGGCACCGT
GATGCGCCTGGGTGACACCCCGCGTACCGCGATCCCGGTAGTCTCGACGGGCTCTCTGGGGCTGGATATCGCACTGGGTG
TCGGTGGCCTGCCTTACGGCCGTGTCGTCGAGATCTTCGGCCCGGAATCTTCGGGCAAGACGACGCTGACGCTGTCGGTC
ATCGCCCAGGCGCAGAAAGACGGCAAGACCTGCGCCTTCATCGATGCCGAGCACGCGCTCGATCCCAGCTATGCCGAGAA
GCTGGGCGTCAATCTCGACGACCTGCTGGTATCGCAGCCCGATACGGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCGGGTGGTGTCGACGTCATCATCATCGACTCCGTGGCGGCCCTGACGCCGCGTGCCGAGATCGAAGGGGAAATG
GGCGACTCCCACGTTGGTCTGCAGGCGCGTCTGATGTCACAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACCACCGGTGGTA
ACGCGCTGAAGTTCTACTCCAGCGTGCGCCTCGATATTCGTCGCATCGGCTCGGTCAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCCCCGTTCCGGCAGTCCGAGTTCCAGATCCTGTACGGCAA
AGGCATCTACCACGCTGGCGAGGTCATCGATCTCGGCGTCCAGTGCAATCTGGTGGACAAGGCCGGTGCCTGGTACAGCT
ACAAGGGCAGCAAGATCGGTCAGGGCAAGGCCAATGCCGCGCAGTATCTCGAGGAGCATCCCGAGACGATGACCGAGATC
GAAGACCAGATCCGGGCCCAGCTGCTCGCCACGCCGACGACGCAGGAAAAGGCGCCCGAGGCTGCCGCTGCCGAAAGCGA
CGACGCCAACGATTCGTTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.473

95.48

0.768
  recA Acinetobacter baylyi ADP1

73.837

97.175

0.718
  recA Acinetobacter baumannii D1279779

74.622

93.503

0.698
  recA Glaesserella parasuis strain SC1401

68.876

98.023

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.591

96.61

0.672
  recA Vibrio cholerae strain A1552

69.591

96.61

0.672
  recA Neisseria gonorrhoeae MS11

70.898

91.243

0.647
  recA Neisseria gonorrhoeae MS11

70.898

91.243

0.647
  recA Neisseria gonorrhoeae strain FA1090

70.898

91.243

0.647
  recA Ralstonia pseudosolanacearum GMI1000

72.063

88.983

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

92.09

0.579
  recA Helicobacter pylori 26695

62.006

92.938

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

94.068

0.573
  recA Helicobacter pylori strain NCTC11637

61.702

92.938

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

90.395

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.112

95.763

0.556
  recA Streptococcus mutans UA159

55.056

100

0.554
  recA Streptococcus pyogenes NZ131

55.46

98.305

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

92.373

0.545
  recA Streptococcus pneumoniae R6

58.589

92.09

0.54
  recA Streptococcus pneumoniae Rx1

58.589

92.09

0.54
  recA Streptococcus pneumoniae D39

58.589

92.09

0.54
  recA Streptococcus pneumoniae TIGR4

58.589

92.09

0.54
  recA Streptococcus mitis SK321

58.589

92.09

0.54
  recA Streptococcus mitis NCTC 12261

58.589

92.09

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.055

92.09

0.525