Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SR908_RS10635 Genome accession   NZ_CP140151
Coordinates   2232213..2233298 (+) Length   361 a.a.
NCBI ID   WP_097023502.1    Uniprot ID   A0A285VTW1
Organism   Chromohalobacter canadensis strain ATCC 43984     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2227213..2238298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR908_RS10620 (SR908_10620) fdxA 2228315..2228638 (-) 324 WP_178998531.1 ferredoxin FdxA -
  SR908_RS10625 (SR908_10625) mutS 2228812..2231391 (-) 2580 WP_246922416.1 DNA mismatch repair protein MutS -
  SR908_RS10630 (SR908_10630) - 2231550..2232074 (+) 525 WP_246922414.1 CinA family protein -
  SR908_RS10635 (SR908_10635) recA 2232213..2233298 (+) 1086 WP_097023502.1 recombinase RecA Machinery gene
  SR908_RS10640 (SR908_10640) - 2233301..2233759 (+) 459 WP_097023503.1 regulatory protein RecX -
  SR908_RS10645 (SR908_10645) alaS 2233964..2236570 (+) 2607 WP_246922413.1 alanine--tRNA ligase -
  SR908_RS10650 (SR908_10650) - 2236650..2237894 (+) 1245 WP_246922411.1 aspartate kinase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38466.66 Da        Isoelectric Point: 4.8564

>NTDB_id=913069 SR908_RS10635 WP_097023502.1 2232213..2233298(+) (recA) [Chromohalobacter canadensis strain ATCC 43984]
MAQDDNRSKALNAALSQIERQFGKGAVMRLGDTPRVALPAVSTGSLGLDIALGVGGLPLGRVVEIFGPESSGKTTMTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGINLDDLLVSQPDTGEQALEICDMLVRSGGVDVIVVDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKVTGNIKNANCMVMFVNQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQQGLVDKAGAWYSYQGSKIGQGKANAAQFLEDNPAIMEEI
ENEIRARLLSTPKAEDDKAEEGASEGKEDKAAATQDDGNLL

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=913069 SR908_RS10635 WP_097023502.1 2232213..2233298(+) (recA) [Chromohalobacter canadensis strain ATCC 43984]
ATGGCACAGGACGACAACCGTTCCAAGGCGCTCAACGCAGCGCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCGCCGT
GATGCGTCTTGGCGATACGCCGCGCGTAGCGCTTCCCGCCGTCTCCACCGGGTCGCTGGGGCTGGATATCGCTCTTGGCG
TGGGTGGGCTGCCGCTAGGCCGCGTGGTCGAGATCTTTGGCCCCGAATCATCGGGCAAGACGACGATGACGTTGTCGGTG
ATCGCCCAGGCACAGAAACAAGGCAAAACCTGTGCCTTCATCGATGCCGAGCACGCGCTGGACCCGAGTTACGCTGAAAA
GCTGGGCATCAATCTCGATGACTTGTTGGTCTCGCAGCCGGATACCGGCGAACAGGCGCTGGAAATCTGTGACATGTTGG
TGCGCTCCGGCGGTGTCGACGTCATCGTCGTCGATTCGGTTGCAGCCTTGACGCCGCGTGCCGAGATCGAGGGTGAGATG
GGGGATTCCCACGTTGGCCTGCAAGCCAGGTTGATGTCGCAGGCACTGCGCAAGGTGACCGGCAACATCAAGAACGCCAA
TTGCATGGTGATGTTCGTCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTAGCCCCGAAACCACTACCGGCGGCA
ACGCATTGAAGTTCTACTCCAGTGTGCGTCTCGACATCCGGCGGACCGGCTCGGTCAAGCAGGGCGACGAGGTGACCGGC
AACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCACCGTTCCGCCAGGCCGAGTTTCAGATCCTCTATGGCAA
GGGTATCTACCATGCTGGTGAGGTCATCGATCTCGGGGTGCAGCAAGGCTTGGTAGATAAGGCGGGTGCCTGGTATAGCT
ACCAGGGAAGCAAGATTGGCCAGGGCAAGGCCAACGCTGCACAGTTCCTGGAAGATAACCCGGCGATCATGGAAGAGATC
GAAAATGAGATTCGCGCGCGGTTGCTCTCCACGCCCAAGGCGGAAGACGACAAGGCGGAGGAAGGTGCGAGCGAAGGCAA
GGAAGATAAGGCCGCTGCGACCCAGGACGATGGCAACCTGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285VTW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.706

94.183

0.751
  recA Acinetobacter baylyi ADP1

74.277

95.845

0.712
  recA Acinetobacter baumannii D1279779

75.61

90.859

0.687
  recA Vibrio cholerae strain A1552

71.56

90.582

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.56

90.582

0.648
  recA Neisseria gonorrhoeae MS11

71.827

89.474

0.643
  recA Neisseria gonorrhoeae MS11

71.827

89.474

0.643
  recA Neisseria gonorrhoeae strain FA1090

71.827

89.474

0.643
  recA Glaesserella parasuis strain SC1401

70

91.413

0.64
  recA Ralstonia pseudosolanacearum GMI1000

70.37

89.751

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.819

94.737

0.576
  recA Streptococcus mutans UA159

56.749

100

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

91.69

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

56.583

98.892

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

88.643

0.557
  recA Helicobacter pylori 26695

61.656

90.305

0.557
  recA Helicobacter pylori strain NCTC11637

61.656

90.305

0.557
  recA Streptococcus mitis SK321

56.56

95.014

0.537
  recA Streptococcus pyogenes NZ131

58.232

90.859

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.751

91.136

0.526
  recA Streptococcus mitis NCTC 12261

58.282

90.305

0.526
  recA Streptococcus pneumoniae Rx1

57.362

90.305

0.518
  recA Streptococcus pneumoniae D39

57.362

90.305

0.518
  recA Streptococcus pneumoniae R6

57.362

90.305

0.518
  recA Streptococcus pneumoniae TIGR4

57.362

90.305

0.518
  recA Lactococcus lactis subsp. cremoris KW2

55.556

89.751

0.499