Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U2P90_RS00025 Genome accession   NZ_CP140098
Coordinates   3049..4122 (-) Length   357 a.a.
NCBI ID   WP_322473251.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS00010 (U2P90_00010) - 833..1813 (-) 981 WP_322473248.1 PilW family protein -
  U2P90_RS00015 (U2P90_00015) - 1815..2216 (-) 402 WP_322473249.1 type IV pilus modification PilV family protein -
  U2P90_RS00020 (U2P90_00020) - 2206..2718 (-) 513 WP_322473250.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  U2P90_RS00025 (U2P90_00025) recA 3049..4122 (-) 1074 WP_322473251.1 recombinase RecA Machinery gene
  U2P90_RS00030 (U2P90_00030) thpR 4119..4988 (-) 870 WP_322473252.1 RNA 2',3'-cyclic phosphodiesterase -
  U2P90_RS00035 (U2P90_00035) - 4985..6190 (-) 1206 WP_322473253.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  U2P90_RS00040 (U2P90_00040) - 6457..7674 (-) 1218 WP_322473254.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37975.68 Da        Isoelectric Point: 5.6184

>NTDB_id=912482 U2P90_RS00025 WP_322473251.1 3049..4122(-) (recA) [Deinococcus sp. AB2017081]
MSKDNPKEITAAPNDSKERAKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRVTEIYGP
ESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA
ALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRK
IGQPVKLGNDAVGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQGKEKAI
AYLSERPQMQDEIRERVMVAIRTGNAPELPTVPAVAE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=912482 U2P90_RS00025 WP_322473251.1 3049..4122(-) (recA) [Deinococcus sp. AB2017081]
ATGAGCAAGGACAACCCCAAGGAGATCACCGCCGCCCCCAACGACAGCAAGGAACGCGCCAAGGCCATCGAGACGGCCAT
GAGCCAGATCGAGAAGGCCTTCGGCAAGGGCAGCATCATGAAGCTCGGCGCCGAGAGCAAGCTCGACGTGCAGGTCGTGT
CCACCGGCAGCCTCAGCCTGGATCTGGCGCTGGGCGTGGGCGGCATTCCGCGCGGCCGCGTCACCGAGATCTATGGCCCG
GAATCCGGCGGCAAGACCACCCTGGCGCTGGCCATCGTCGCGCAGGCCCAGAAGGCCGGCGGCACCTGCGCCTTCATTGA
TGCCGAGCATGCCCTGGATCCCGTGTACGCCCGCGCCCTGGGCGTGAACACCGACGAACTGCTGGTGTCGCAACCCGACA
ACGGCGAACAGGCCCTGGAGATCATGGAGCTGCTGGTGCGTTCGGGGGCCATTGACGTGGTCGTCGTGGACTCCGTGGCG
GCCCTGACCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCACGGCTCATGTCCCAGGC
GCTGCGCAAGCTCACCGCAATCCTGTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCG
TGATGTACGGCAACCCCGAGACGACCACCGGCGGCCGCGCCCTGAAGTTCTACGCGTCCGTGCGCCTGGACGTCCGCAAG
ATCGGCCAGCCGGTCAAGCTCGGCAACGACGCCGTGGGCAACACGGTCAAGGTCAAGACCGTAAAGAACAAGGTGGCGCC
CCCCTTCAAGGAGGTCGAGCTGACCCTGATGTACGGCAAGGGCTTCGACCAACTCAGTGACCTCGTGACCCTGGCCTCCG
ACATGGACATCATCAAGAAGGCCGGCAGCTTCTACTCCTACGGCGACGAGCGCATCGGCCAGGGCAAGGAGAAGGCCATC
GCGTACCTCAGCGAGCGGCCCCAGATGCAGGACGAGATCCGCGAACGCGTCATGGTCGCCATCCGCACAGGCAACGCCCC
GGAGCTGCCCACGGTTCCGGCGGTCGCTGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

92.174

96.639

0.891
  recA Streptococcus mitis NCTC 12261

64.923

91.036

0.591
  recA Streptococcus pneumoniae D39

65.325

90.476

0.591
  recA Streptococcus pneumoniae R6

65.325

90.476

0.591
  recA Streptococcus pneumoniae TIGR4

65.325

90.476

0.591
  recA Streptococcus pneumoniae Rx1

65.325

90.476

0.591
  recA Streptococcus pyogenes NZ131

62.5

94.118

0.588
  recA Streptococcus mitis SK321

64.615

91.036

0.588
  recA Glaesserella parasuis strain SC1401

64.798

89.916

0.583
  recA Acinetobacter baylyi ADP1

64.198

90.756

0.583
  recA Acinetobacter baumannii D1279779

64.486

89.916

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.31

94.118

0.577
  recA Streptococcus mutans UA159

61.012

94.118

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

90.476

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.123

91.317

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.62

87.675

0.549
  recA Vibrio cholerae strain A1552

62.62

87.675

0.549
  recA Neisseria gonorrhoeae MS11

60.681

90.476

0.549
  recA Neisseria gonorrhoeae MS11

60.681

90.476

0.549
  recA Neisseria gonorrhoeae strain FA1090

60.681

90.476

0.549
  recA Ralstonia pseudosolanacearum GMI1000

63.312

86.275

0.546
  recA Helicobacter pylori 26695

56.509

94.678

0.535
  recA Helicobacter pylori strain NCTC11637

56.509

94.678

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.375

89.636

0.532
  recA Pseudomonas stutzeri DSM 10701

55.102

96.078

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.456

93.277

0.527