Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U0024_RS26570 Genome accession   NZ_CP139994
Coordinates   5784767..5785876 (-) Length   369 a.a.
NCBI ID   WP_302092636.1    Uniprot ID   -
Organism   Comamonas testosteroni strain HAMBI_0403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5779767..5790876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0024_RS26550 (U0024_26560) argC 5781274..5782206 (+) 933 WP_302092632.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  U0024_RS26555 (U0024_26565) yddG 5782407..5783330 (+) 924 WP_304349483.1 aromatic amino acid DMT transporter YddG -
  U0024_RS26560 (U0024_26570) - 5783334..5784056 (-) 723 WP_304349482.1 hypothetical protein -
  U0024_RS26565 (U0024_26575) recX 5784108..5784584 (-) 477 WP_304349481.1 recombination regulator RecX -
  U0024_RS26570 (U0024_26580) recA 5784767..5785876 (-) 1110 WP_302092636.1 recombinase RecA Machinery gene
  U0024_RS26575 (U0024_26585) - 5786015..5786506 (+) 492 WP_304349480.1 MarR family winged helix-turn-helix transcriptional regulator -
  U0024_RS26580 (U0024_26590) - 5786616..5787293 (+) 678 WP_003060046.1 response regulator transcription factor -
  U0024_RS26585 (U0024_26595) - 5787399..5788841 (+) 1443 WP_304349479.1 sensor histidine kinase -
  U0024_RS26590 (U0024_26600) - 5789062..5790039 (+) 978 WP_302092639.1 tripartite tricarboxylate transporter substrate binding protein BugE -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39003.89 Da        Isoelectric Point: 5.3847

>NTDB_id=912312 U0024_RS26570 WP_302092636.1 5784767..5785876(-) (recA) [Comamonas testosteroni strain HAMBI_0403]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKLGGTCAFIDAEHALDTGYAQKLGVSLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRDSLGIKLLPVDGAAAAEAKPAKGGKGKVDKDGVIEG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=912312 U0024_RS26570 WP_302092636.1 5784767..5785876(-) (recA) [Comamonas testosteroni strain HAMBI_0403]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCTGCAGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGTGAAGGTGAAGCCATCGAAGACATTCAGGTCGTCTCCACCGGCTCTC
TGGGTCTGGACATCGCGCTGGGCGTAGGCGGTCTGCCGCGCGGCCGCGTGATTGAAATCTACGGCCCCGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCATGC
GCTGGACACCGGCTATGCCCAGAAGCTGGGCGTGAGCCTCAGCGACGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CACTGGAGATCTGCGACAGTCTGGTGCGCTCGGGTGCCGTGGACCTGATCGTCATCGACTCGGTGGCCGCCTTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCCCCCTTCAAGACGGC
CGAGTTCGACATCCTGTTTGGCGAAGGCATCAGCCGCGAAGGCGAGATTCTGGACATGGGCGTGAACGCCAAGATTCTGG
AAAAGAGCGGTGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAGTTCCTGCGCGAG
AACCCCGCGCTGGCCATCGAAATCGAAAACAAGGTGCGCGATAGCCTGGGCATCAAGCTGCTGCCCGTGGACGGTGCAGC
GGCTGCTGAAGCCAAGCCTGCCAAGGGCGGCAAGGGCAAGGTAGACAAGGACGGAGTGATTGAAGGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.076

85.095

0.715
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.643

91.057

0.634
  recA Neisseria gonorrhoeae MS11

69.643

91.057

0.634
  recA Pseudomonas stutzeri DSM 10701

71.166

88.347

0.629
  recA Glaesserella parasuis strain SC1401

70.988

87.805

0.623
  recA Acinetobacter baylyi ADP1

69.632

88.347

0.615
  recA Acinetobacter baumannii D1279779

69.632

88.347

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.325

88.347

0.612
  recA Vibrio cholerae strain A1552

69.325

88.347

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.789

92.683

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.364

89.431

0.593
  recA Helicobacter pylori strain NCTC11637

64.024

88.889

0.569
  recA Helicobacter pylori 26695

64.024

88.889

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

88.618

0.564
  recA Streptococcus mutans UA159

57.222

97.561

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

61.562

90.244

0.556
  recA Streptococcus mitis SK321

59.13

93.496

0.553
  recA Streptococcus mitis NCTC 12261

58.841

93.496

0.55
  recA Lactococcus lactis subsp. cremoris KW2

60.417

91.057

0.55
  recA Streptococcus pyogenes NZ131

60.299

90.786

0.547
  recA Streptococcus pneumoniae Rx1

58.892

92.954

0.547
  recA Streptococcus pneumoniae D39

58.892

92.954

0.547
  recA Streptococcus pneumoniae R6

58.892

92.954

0.547
  recA Streptococcus pneumoniae TIGR4

58.892

92.954

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

89.431

0.534