Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SJH90_RS06050 Genome accession   NZ_CP139937
Coordinates   1211686..1212744 (+) Length   352 a.a.
NCBI ID   WP_043082325.1    Uniprot ID   A0A089PJX9
Organism   Pluralibacter gergoviae strain L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1206686..1217744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH90_RS06025 mltB 1207181..1208260 (+) 1080 WP_043082320.1 lytic murein transglycosylase B -
  SJH90_RS06030 - 1208492..1209166 (+) 675 WP_048253326.1 metal ABC transporter ATP-binding protein -
  SJH90_RS06035 - 1209163..1210026 (+) 864 WP_043082322.1 metal ABC transporter permease -
  SJH90_RS06040 - 1210037..1210915 (+) 879 WP_048253325.1 metal ABC transporter substrate-binding protein -
  SJH90_RS06045 pncC 1211053..1211550 (+) 498 WP_048253324.1 nicotinamide-nucleotide amidase -
  SJH90_RS06050 recA 1211686..1212744 (+) 1059 WP_043082325.1 recombinase RecA Machinery gene
  SJH90_RS06055 recX 1212818..1213336 (+) 519 WP_043082327.1 recombination regulator RecX -
  SJH90_RS06060 alaS 1213469..1216096 (+) 2628 WP_043082329.1 alanine--tRNA ligase -
  SJH90_RS06065 csrA 1216334..1216519 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37854.30 Da        Isoelectric Point: 4.8875

>NTDB_id=911879 SJH90_RS06050 WP_043082325.1 1211686..1212744(+) (recA) [Pluralibacter gergoviae strain L1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDDKPAFAVDGNDAEETHEEF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=911879 SJH90_RS06050 WP_043082325.1 1211686..1212744(+) (recA) [Pluralibacter gergoviae strain L1]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAACAGTTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGTG
CGGGCGGTCTGCCGATGGGACGTATCGTAGAGATCTACGGGCCTGAGTCCTCCGGTAAAACCACCCTGACCCTGCAGGTG
ATCGCCGCCGCGCAGCGTGAAGGCAAAACCTGTGCCTTTATTGATGCCGAGCACGCGCTGGATCCGGTCTATGCCCGCAA
GCTGGGCGTCGATATCGACAACCTGCTCTGCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACGCCCTGG
CGCGCTCAGGCGCGGTGGACGTGCTGGTGGTTGACTCCGTCGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGTCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTTGCCGGTAACCTCAAGCAGTCCAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCGGAAACCACCACCGGCGGTA
ATGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAAGAGGGCGATAACGTCGTCGGC
AGCGAAACCCGCGTCAAGGTCGTGAAGAACAAGATTGCCGCGCCGTTCAAGCAGGCGGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCCTCGGCGAACTGGTCGATCTCGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAAATTGGTCAGGGTAAGGCGAACGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCCAAAGAGATC
GAGAAAAAGGTGCGCGAACTGCTGCTGAACAACCAGGACGATAAGCCGGCGTTCGCCGTTGACGGCAACGATGCGGAAGA
GACGCACGAAGAGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089PJX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

94.034

0.795
  recA Vibrio cholerae strain A1552

84.592

94.034

0.795
  recA Acinetobacter baylyi ADP1

71.92

99.148

0.713
  recA Acinetobacter baumannii D1279779

75.229

92.898

0.699
  recA Pseudomonas stutzeri DSM 10701

75.229

92.898

0.699
  recA Glaesserella parasuis strain SC1401

69.914

99.148

0.693
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.318

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56