Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SOM08_RS22190 Genome accession   NZ_CP139793
Coordinates   4614509..4615633 (-) Length   374 a.a.
NCBI ID   WP_116960107.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4609509..4620633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS22165 (SOM08_22165) - 4609809..4610594 (-) 786 WP_070399746.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  SOM08_RS22170 (SOM08_22170) sucD 4610824..4611717 (-) 894 WP_116960103.1 succinate--CoA ligase subunit alpha -
  SOM08_RS22175 (SOM08_22175) sucC 4611732..4612895 (-) 1164 WP_116960104.1 ADP-forming succinate--CoA ligase subunit beta -
  SOM08_RS22180 (SOM08_22180) argC 4613064..4613990 (+) 927 WP_116960105.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  SOM08_RS22185 (SOM08_22185) recX 4614045..4614503 (-) 459 WP_116960106.1 recombination regulator RecX -
  SOM08_RS22190 (SOM08_22190) recA 4614509..4615633 (-) 1125 WP_116960107.1 recombinase RecA Machinery gene
  SOM08_RS22195 (SOM08_22195) - 4615773..4616246 (+) 474 WP_322469776.1 MarR family transcriptional regulator -
  SOM08_RS22200 (SOM08_22200) - 4616306..4616974 (+) 669 WP_116960108.1 response regulator transcription factor -
  SOM08_RS22205 (SOM08_22205) - 4617085..4618458 (+) 1374 WP_416187026.1 sensor histidine kinase N-terminal domain-containing protein -
  SOM08_RS22210 (SOM08_22210) - 4618480..4619124 (-) 645 WP_116960110.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39948.72 Da        Isoelectric Point: 5.0159

>NTDB_id=911055 SOM08_RS22190 WP_116960107.1 4614509..4615633(-) (recA) [Hydrogenophaga sp. SNF1]
MDAPVKNAALNSEKAKALQAALAQIEKQFGKGTIMKLGEGEQIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQRLNGTCAFVDAEHALDVQYAQKLGVNLPELLISQPDTGEQALEIVDSLVRSGAVDLVVIDSVAALTP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDLGVVHRVVEKSGAWYAYNGEKIGQGRDNAREFLKE
NVELRVEIENKVREALGVPQLPLDGASGEEEAAPAKARKSKAKADAADAEAADA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=911055 SOM08_RS22190 WP_116960107.1 4614509..4615633(-) (recA) [Hydrogenophaga sp. SNF1]
ATGGATGCACCCGTGAAAAACGCCGCCCTCAACAGCGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACGATCATGAAGCTCGGCGAGGGTGAGCAGATCGAGGACATCCAGGTTGTCTCCACCGGCTCGC
TGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGTGGCCGCGTGATCGAAATCTACGGCCCGGAATCGTCCGGC
AAGACCACGCTCACCCTGCAGGTCATCGCCGAGATGCAGCGCCTGAACGGCACCTGCGCCTTCGTCGACGCCGAGCACGC
CCTGGACGTGCAGTACGCGCAAAAACTCGGCGTGAACCTGCCCGAGCTGCTGATCAGCCAGCCCGACACCGGCGAACAGG
CGCTGGAGATCGTCGACTCGCTGGTGCGTTCGGGTGCGGTGGACCTGGTCGTCATCGACTCGGTGGCCGCGCTCACGCCC
AAGGCCGAGATCGAGGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCGCGGCTCATGAGCCAGGCCCTGCGCAAGCT
CACGGCGACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCA
GCCCCGAGACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTTTCGCCGCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGTGAGATCCTCGACCTGGGCGTGGTGCACCGCGTGGTCG
AGAAGTCCGGTGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGCGAGTTCCTCAAGGAA
AACGTCGAGTTGCGCGTCGAGATCGAGAACAAGGTGCGCGAGGCCCTGGGCGTGCCGCAGCTGCCGCTGGATGGCGCTTC
GGGCGAGGAAGAGGCCGCGCCCGCCAAGGCGCGCAAATCCAAGGCCAAAGCCGATGCCGCCGACGCCGAGGCGGCCGACG
CCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.583

89.037

0.735
  recA Neisseria gonorrhoeae strain FA1090

69.096

91.711

0.634
  recA Neisseria gonorrhoeae MS11

69.096

91.711

0.634
  recA Neisseria gonorrhoeae MS11

69.096

91.711

0.634
  recA Pseudomonas stutzeri DSM 10701

71.56

87.433

0.626
  recA Glaesserella parasuis strain SC1401

71.914

86.631

0.623
  recA Acinetobacter baylyi ADP1

66.667

92.246

0.615
  recA Vibrio cholerae strain A1552

68.882

88.503

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.882

88.503

0.61
  recA Acinetobacter baumannii D1279779

69.113

87.433

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.077

90.642

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.758

88.235

0.58
  recA Helicobacter pylori 26695

63.081

91.979

0.58
  recA Helicobacter pylori strain NCTC11637

63.081

91.979

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

87.433

0.572
  recA Streptococcus mitis SK321

56.986

97.594

0.556
  recA Streptococcus mitis NCTC 12261

56.712

97.594

0.553
  recA Streptococcus mutans UA159

56.667

96.257

0.545
  recA Lactococcus lactis subsp. cremoris KW2

61.631

88.503

0.545
  recA Streptococcus pyogenes NZ131

60.241

88.77

0.535
  recA Latilactobacillus sakei subsp. sakei 23K

60.606

88.235

0.535
  recA Streptococcus pneumoniae Rx1

59.76

89.037

0.532
  recA Streptococcus pneumoniae D39

59.76

89.037

0.532
  recA Streptococcus pneumoniae R6

59.76

89.037

0.532
  recA Streptococcus pneumoniae TIGR4

59.76

89.037

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

86.898

0.521