Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   T7987_RS10045 Genome accession   NZ_CP139725
Coordinates   1989887..1990957 (-) Length   356 a.a.
NCBI ID   WP_322327791.1    Uniprot ID   -
Organism   Sulfitobacter faviae strain OXR-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984887..1995957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T7987_RS10030 (T7987_10030) - 1985990..1986715 (-) 726 WP_322327789.1 phosphatase PAP2 family protein -
  T7987_RS10035 (T7987_10035) - 1986801..1987088 (-) 288 WP_067261798.1 DUF1330 domain-containing protein -
  T7987_RS10040 (T7987_10040) alaS 1987094..1989751 (-) 2658 WP_322327790.1 alanine--tRNA ligase -
  T7987_RS10045 (T7987_10045) recA 1989887..1990957 (-) 1071 WP_322327791.1 recombinase RecA Machinery gene
  T7987_RS10050 (T7987_10050) - 1991161..1991754 (+) 594 WP_322329703.1 gamma-glutamyl kinase -
  T7987_RS10055 (T7987_10055) - 1991773..1994079 (-) 2307 WP_322327792.1 ATP-binding protein -
  T7987_RS10060 (T7987_10060) - 1994183..1995343 (-) 1161 WP_322327793.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37895.37 Da        Isoelectric Point: 4.9474

>NTDB_id=910761 T7987_RS10045 WP_322327791.1 1989887..1990957(-) (recA) [Sulfitobacter faviae strain OXR-9]
MATADLLTMDSKKTAEKQKALDSALAQIERQFGKGSIMKLGAEGAIQDIKASSTGSLGLDIALGIGGLPMGRIIEIYGPE
SSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDIDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAA
LTPKSELEGEMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GALKDRDEVVGNATKVKIVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFSYGDERIGQGRENAKTF
LKQNTAMAAEIEDKIRAAHGLDFEGSGGDDADILEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=910761 T7987_RS10045 WP_322327791.1 1989887..1990957(-) (recA) [Sulfitobacter faviae strain OXR-9]
ATGGCAACGGCAGATCTTTTGACGATGGACAGCAAGAAAACCGCAGAAAAGCAAAAGGCGCTCGACAGCGCGCTGGCCCA
GATCGAACGTCAGTTCGGCAAAGGGTCGATCATGAAACTGGGGGCCGAAGGGGCAATCCAGGATATCAAAGCTAGCTCCA
CAGGCTCGCTCGGCCTTGATATTGCGCTTGGCATCGGTGGCTTGCCGATGGGGCGTATCATTGAGATTTATGGCCCGGAA
TCCTCGGGTAAAACAACGCTGACCCTGCACTGTGTGGCAGAGCAGCAGAAGGCCGGCGGCGTTTGTGCCTTTGTCGACGC
GGAACATGCGCTTGATCCGCAATATGCGAAAAAGCTTGGCGTAGACATTGACGAGCTGTTGATCTCCCAGCCCGACACCG
GCGAACAGGCGCTTGAGATCACCGATACGCTGGTACGCTCCGGCGCGGTCAATATGGTGATCGTCGATTCCGTCGCGGCC
CTGACGCCGAAATCCGAGCTTGAAGGTGAGATGGGCGACAGCAATGTCGGTGTGCAGGCCCGTTTGATGAGCCAGGCGAT
GCGTAAGCTGACCGGTTCGATCAGCCGGTCCAATTGTATGGTGATCTTCATCAACCAAATCCGGATGAAGATCGGCGTAA
TGTTCGGCTCTCCTGAGACCACTACGGGCGGCAACGCGCTGAAGTTTTATTCCTCCGTCCGTCTCGACATCCGTCGGATC
GGCGCCCTGAAGGACCGGGACGAGGTTGTTGGCAACGCAACGAAGGTCAAGATCGTCAAGAACAAAGTGGCGCCGCCTTT
CAAACAGGTCGAATTCGACATCATGTATGGCGAAGGCATCTCGAAAATGGGCGAGTTGCTGGACCTTGGGGTGAAGGCCG
GTGTGGTCGATAAATCCGGCTCATGGTTCAGCTATGGGGATGAGCGGATCGGGCAGGGGCGTGAGAACGCCAAGACCTTC
CTGAAACAGAACACCGCCATGGCCGCTGAGATCGAGGATAAGATCCGCGCCGCTCATGGGTTGGACTTCGAAGGCTCTGG
CGGTGACGATGCGGATATTCTCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.037

92.135

0.654
  recA Glaesserella parasuis strain SC1401

70.405

90.169

0.635
  recA Pseudomonas stutzeri DSM 10701

69.47

90.169

0.626
  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624
  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.477

92.416

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.767

92.978

0.621
  recA Vibrio cholerae strain A1552

69.062

89.888

0.621
  recA Acinetobacter baumannii D1279779

69.062

89.888

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.062

89.888

0.621
  recA Acinetobacter baylyi ADP1

68.438

89.888

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.776

94.101

0.61
  recA Helicobacter pylori strain NCTC11637

65.455

92.697

0.607
  recA Helicobacter pylori 26695

64.848

92.697

0.601
  recA Lactococcus lactis subsp. cremoris KW2

60.857

98.315

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

91.573

0.584
  recA Streptococcus mitis SK321

61.631

92.978

0.573
  recA Streptococcus pneumoniae R6

61.329

92.978

0.57
  recA Streptococcus mitis NCTC 12261

61.329

92.978

0.57
  recA Streptococcus pneumoniae TIGR4

61.329

92.978

0.57
  recA Streptococcus pneumoniae Rx1

61.329

92.978

0.57
  recA Streptococcus pneumoniae D39

61.329

92.978

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

91.573

0.562
  recA Streptococcus mutans UA159

59.697

92.697

0.553
  recA Streptococcus pyogenes NZ131

59.878

92.416

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

91.011

0.553