Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SO588_RS07985 Genome accession   NZ_CP139637
Coordinates   1577895..1578956 (-) Length   353 a.a.
NCBI ID   WP_024500762.1    Uniprot ID   A0A806T290
Organism   Limosilactobacillus fermentum strain DX2034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572895..1583956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO588_RS07975 mutS 1573195..1575837 (-) 2643 WP_046026107.1 DNA mismatch repair protein MutS -
  SO588_RS07980 rny 1575931..1577490 (-) 1560 WP_012390969.1 ribonuclease Y -
  SO588_RS07985 recA 1577895..1578956 (-) 1062 WP_024500762.1 recombinase RecA Machinery gene
  SO588_RS07990 - 1579050..1580294 (-) 1245 WP_046026108.1 competence/damage-inducible protein A -
  SO588_RS07995 pgsA 1580371..1580955 (-) 585 WP_003682805.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SO588_RS08000 - 1580971..1581975 (-) 1005 WP_003686010.1 RodZ domain-containing protein -
  SO588_RS08005 yfmH 1582072..1583373 (-) 1302 WP_046026109.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38111.22 Da        Isoelectric Point: 4.9958

>NTDB_id=910374 SO588_RS07985 WP_024500762.1 1577895..1578956(-) (recA) [Limosilactobacillus fermentum strain DX2034]
MADQRKAALDNALRKIEKNFGKGSIMRMGDAADTKIATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA
EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR
AKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRENAKQWFADHEDAMNELMN
KVRVAYGMEPDEAPAAKEGEPQQETIEEASSDK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=910374 SO588_RS07985 WP_024500762.1 1577895..1578956(-) (recA) [Limosilactobacillus fermentum strain DX2034]
TTGGCAGATCAACGAAAAGCAGCCTTAGATAACGCCCTGCGTAAGATTGAAAAGAACTTTGGGAAGGGTTCGATCATGCG
GATGGGTGACGCCGCCGACACCAAGATTGCAACCATTTCCAGTGGCTCCTTAGCCATTGACGAAGCCCTCGGTGTAGGGG
GGTACCCACGGGGCCGAATCATTGAAATGTACGGTCCGGAAAGTTCCGGGAAGACGACCGTTGCTCTCCACGCCGTCGCT
GAAGTGCAACGCCGTGGGGGGACGGCCGCCTACATCGACGCCGAAAACGCCCTCGATCCCCAGTACGCTACCGCCCTGGG
GGTTCAAATTAACGACTTGCTCTTGTCCCAACCAGACACCGGTGAACAGGGGTTGGAAATTGCCGACGCCCTGATCGCTT
CGGGAGCCGTCGACATCGTGGTGGTTGACTCCGTGGCCGCCCTGGTTCCCCGGGCCGAAATCGAAGGGGAAATGGGGGAC
ACCCACGTGGGGTTACAGGCCCGCTTGATGTCCCAAGCCCTGCGGAAGCTTTCCGGGGAAATCAACAAGACCAAGACGAT
CGCCATCTTCATCAACCAAATCCGGGAAAAGGTGGGGGTGATGTTTGGGAACCCGGAAACCACCCCTGGTGGTCGGGCCC
TGAAGTTCTACTCAACCATTCGGATGGAAATCCGGCGCGGTGAACAACTGAAGAACGGGACCGATGTGATCGGGAACCGG
GCCAAGATTAAGGTCGTGAAGAACAAGGTGGCACCGCCGTTCCGCAAGGCCGAAGTAGACATCATGTATGGGGAAGGGAT
CTCCAAGACGGGGGAACTGCTCGATATGGCCGTCGAAAAGGACCTGGTCAACAAGTCCGGGGCCTGGTATTCTTATGGTA
ACGAACGGATTGGCCAAGGGCGTGAAAACGCTAAGCAGTGGTTTGCGGACCACGAAGACGCCATGAACGAGCTGATGAAC
AAGGTGCGGGTGGCCTACGGGATGGAACCGGACGAAGCGCCGGCCGCCAAGGAAGGCGAACCGCAACAAGAAACGATTGA
AGAAGCGTCGAGTGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806T290

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.882

96.317

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

74.772

93.201

0.697
  recA Streptococcus mitis SK321

66.667

97.734

0.652
  recA Streptococcus mutans UA159

64.426

100

0.652
  recA Streptococcus pyogenes NZ131

68.278

93.768

0.64
  recA Streptococcus mitis NCTC 12261

68.389

93.201

0.637
  recA Streptococcus pneumoniae Rx1

68.085

93.201

0.635
  recA Streptococcus pneumoniae D39

68.085

93.201

0.635
  recA Streptococcus pneumoniae R6

68.085

93.201

0.635
  recA Streptococcus pneumoniae TIGR4

68.085

93.201

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.566

94.051

0.626
  recA Neisseria gonorrhoeae strain FA1090

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Ralstonia pseudosolanacearum GMI1000

63.492

89.235

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.939

92.635

0.555
  recA Glaesserella parasuis strain SC1401

55.114

99.717

0.55
  recA Helicobacter pylori 26695

57.27

95.467

0.547
  recA Helicobacter pylori strain NCTC11637

57.27

95.467

0.547
  recA Pseudomonas stutzeri DSM 10701

59.133

91.501

0.541
  recA Vibrio cholerae strain A1552

58.824

91.501

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.824

91.501

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.273

93.484

0.535
  recA Acinetobacter baumannii D1279779

57.895

91.501

0.53
  recA Acinetobacter baylyi ADP1

57.895

91.501

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

92.068

0.524