Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RI049_RS03955 Genome accession   NZ_CP139439
Coordinates   815641..816705 (+) Length   354 a.a.
NCBI ID   WP_039287071.1    Uniprot ID   A0A1X7KF12
Organism   Cedecea neteri strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 810641..821705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI049_RS03925 (RI049_03925) gutQ 811028..811990 (-) 963 WP_321219180.1 arabinose-5-phosphate isomerase GutQ -
  RI049_RS03930 (RI049_03930) - 812048..812200 (+) 153 WP_321219181.1 hypothetical protein -
  RI049_RS03935 (RI049_03935) - 812464..813159 (+) 696 WP_321219182.1 ABC transporter ATP-binding protein -
  RI049_RS03940 (RI049_03940) - 813156..814040 (+) 885 WP_045783762.1 metal ABC transporter permease -
  RI049_RS03945 (RI049_03945) - 814037..814915 (+) 879 WP_045783761.1 metal ABC transporter substrate-binding protein -
  RI049_RS03950 (RI049_03950) pncC 815046..815555 (+) 510 WP_045783760.1 nicotinamide-nucleotide amidase -
  RI049_RS03955 (RI049_03955) recA 815641..816705 (+) 1065 WP_039287071.1 recombinase RecA Machinery gene
  RI049_RS03960 (RI049_03960) - 816780..817295 (+) 516 WP_321219183.1 regulatory protein RecX -
  RI049_RS03965 (RI049_03965) alaS 817435..820062 (+) 2628 WP_045783758.1 alanine--tRNA ligase -
  RI049_RS03970 (RI049_03970) csrA 820308..820493 (+) 186 WP_008458257.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38215.60 Da        Isoelectric Point: 4.8144

>NTDB_id=909727 RI049_RS03955 WP_039287071.1 815641..816705(+) (recA) [Cedecea neteri strain A1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANASNFLKENKPMAEEI
EKKLREMLLNNQDSTPDFTVDDHDEDAVETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=909727 RI049_RS03955 WP_039287071.1 815641..816705(+) (recA) [Cedecea neteri strain A1]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTGGGCCAGATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGTTCCATGGACGTGGAAACGATCTCTACCGGTTCACTTTCTCTGGATATCGCTCTGGGCG
CAGGCGGTCTGCCAATGGGCCGTATCGTAGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGTTGACCCTGCAGGTC
ATTGCTGCCGCGCAGCGTGGCGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGACCCGGTATATGCCAAAAA
GCTGGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CACGTTCCGGTGCGGTTGATGTCATCATCGTTGACTCCGTTGCGGCGCTGACGCCGAAAGCAGAAATCGAAGGTGAAATC
GGTGATTCTCATATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACACTGCTGATCTTCATCAACCAGATTCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAGTTCTATGCTTCTGTCCGCCTCGACATTCGTCGTATCGGTGCCGTGAAGGATGGCGAAAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTGGTTAAAAACAAAATTGCCGCGCCATTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGTGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGAAAAAATCGGTCAGGGCAAGGCAAACGCCAGCAACTTCCTGAAAGAGAACAAGCCGATGGCGGAAGAAATT
GAGAAGAAACTGCGAGAAATGCTGCTGAATAACCAGGACAGCACGCCGGACTTTACGGTAGATGATCACGACGAAGACGC
GGTCGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7KF12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Pseudomonas stutzeri DSM 10701

73.591

95.198

0.701
  recA Acinetobacter baylyi ADP1

70.435

97.458

0.686
  recA Acinetobacter baumannii D1279779

74.006

92.373

0.684
  recA Glaesserella parasuis strain SC1401

69.942

97.74

0.684
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.098

92.09

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Streptococcus pneumoniae D39

59.13

97.458

0.576
  recA Streptococcus pneumoniae Rx1

59.13

97.458

0.576
  recA Streptococcus pneumoniae TIGR4

59.13

97.458

0.576
  recA Streptococcus pneumoniae R6

59.13

97.458

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.507

99.718

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.525

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.068

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Streptococcus mitis NCTC 12261

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus pyogenes NZ131

60.923

91.808

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.678

0.545