Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SLW71_RS15585 Genome accession   NZ_CP139421
Coordinates   3998802..3999842 (-) Length   346 a.a.
NCBI ID   WP_320897956.1    Uniprot ID   -
Organism   Algoriphagus sp. NG3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3993802..4004842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLW71_RS15565 (SLW71_15565) - 3994347..3995174 (-) 828 WP_320897952.1 LiaF transmembrane domain-containing protein -
  SLW71_RS15570 (SLW71_15570) - 3995304..3995993 (-) 690 WP_320897953.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  SLW71_RS15575 (SLW71_15575) queA 3996094..3997143 (-) 1050 WP_320897954.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SLW71_RS15580 (SLW71_15580) - 3997352..3998599 (+) 1248 WP_320897955.1 ABC transporter permease -
  SLW71_RS15585 (SLW71_15585) recA 3998802..3999842 (-) 1041 WP_320897956.1 recombinase RecA Machinery gene
  SLW71_RS15590 (SLW71_15590) - 4000021..4000815 (+) 795 WP_320897957.1 DUF3108 domain-containing protein -
  SLW71_RS15595 (SLW71_15595) - 4000967..4001659 (+) 693 WP_320897959.1 response regulator transcription factor -
  SLW71_RS15600 (SLW71_15600) - 4001660..4002736 (+) 1077 WP_320897961.1 sensor histidine kinase -
  SLW71_RS15605 (SLW71_15605) - 4002816..4003526 (+) 711 WP_320897963.1 RluA family pseudouridine synthase -
  SLW71_RS15610 (SLW71_15610) rplM 4003708..4004151 (+) 444 WP_233754298.1 50S ribosomal protein L13 -
  SLW71_RS15615 (SLW71_15615) rpsI 4004161..4004547 (+) 387 WP_091697419.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37032.62 Da        Isoelectric Point: 5.3444

>NTDB_id=909587 SLW71_RS15585 WP_320897956.1 3998802..3999842(-) (recA) [Algoriphagus sp. NG3]
MSNNAEKLKALQLTIDKLDKAYGKGTVMKLSDNKVVDVPAISTGSLGLDIALGVGGIPRGRVIEIYGPESSGKTTLTLHC
IAEAQKAGGLAAFIDAEHAFDKSYAEKLGIDTENLLISQPDNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGEM
GDSKMGLQARLMSQALRKLTGAINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNIL
GNRTKVKVVKNKVAPPFKVVEFDIMYGQGISKVGEIIDLGVELDIVKKAGSWFSYNGEKLGQGREAVKTLLLDNPELMEE
LELKIKTASGLSSSKATSEAVEQEGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=909587 SLW71_RS15585 WP_320897956.1 3998802..3999842(-) (recA) [Algoriphagus sp. NG3]
ATGAGTAATAACGCTGAAAAATTAAAAGCCCTACAACTGACCATCGATAAGTTGGACAAAGCTTATGGCAAAGGTACTGT
CATGAAGTTGAGTGACAACAAGGTAGTGGATGTCCCGGCGATTTCTACCGGTTCATTGGGATTGGATATTGCTTTGGGGG
TAGGAGGAATTCCCCGCGGTAGAGTAATCGAAATATATGGGCCGGAGTCTTCAGGTAAGACTACGTTGACGCTACATTGT
ATAGCTGAAGCACAGAAAGCCGGAGGATTGGCGGCTTTTATTGATGCAGAGCATGCTTTTGATAAGAGCTATGCGGAGAA
GCTGGGGATTGATACTGAAAATCTTCTGATCTCCCAGCCAGATAATGGAGAACAGGCGCTAGAGATAGCAGAGCACTTGA
TCCGCTCCGGTGCGATTGATATTATCGTGATTGATTCGGTTGCTGCCTTGGTGCCAAAAGGCGAGCTGGAAGGCGAAATG
GGAGATAGTAAAATGGGACTTCAGGCCCGGTTGATGTCACAGGCTTTGCGTAAACTTACCGGAGCAATCAACAAAACAGG
ATGTTCCTGCATATTCATCAACCAGCTCCGCGAAAAGATCGGGGTGATGTTTGGTAATCCGGAAACAACCACTGGCGGGA
ATGCTTTGAAGTTCTATGCTTCCGTGCGATTGGATATCCGAAGAATCGGGCAGATTAAAGAAAGTGCTGACAATATTCTT
GGCAACCGTACCAAAGTGAAAGTAGTCAAAAACAAAGTGGCACCTCCGTTTAAAGTTGTTGAATTTGACATCATGTACGG
GCAAGGAATCTCCAAAGTAGGCGAGATCATTGATCTGGGGGTAGAGTTGGATATAGTCAAGAAGGCAGGTTCATGGTTCT
CTTATAATGGAGAAAAGCTCGGACAAGGCCGTGAAGCTGTAAAAACACTTCTATTGGATAATCCTGAACTGATGGAAGAA
CTTGAGCTGAAAATCAAAACTGCCTCGGGATTGTCCTCATCGAAAGCGACCAGCGAAGCAGTAGAACAAGAAGGGGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.818

95.376

0.685
  recA Ralstonia pseudosolanacearum GMI1000

65.598

99.133

0.65
  recA Acinetobacter baylyi ADP1

63.295

100

0.633
  recA Acinetobacter baumannii D1279779

66.875

92.486

0.618
  recA Helicobacter pylori strain NCTC11637

64.35

95.665

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.095

100

0.613
  recA Helicobacter pylori 26695

64.048

95.665

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

63.03

95.376

0.601
  recA Neisseria gonorrhoeae MS11

60.526

98.844

0.598
  recA Neisseria gonorrhoeae MS11

60.526

98.844

0.598
  recA Neisseria gonorrhoeae strain FA1090

60.526

98.844

0.598
  recA Glaesserella parasuis strain SC1401

62.733

93.064

0.584
  recA Vibrio cholerae strain A1552

62.813

92.486

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

92.486

0.581
  recA Pseudomonas stutzeri DSM 10701

59.467

97.688

0.581
  recA Streptococcus mitis NCTC 12261

58.309

99.133

0.578
  recA Streptococcus mitis SK321

58.309

99.133

0.578
  recA Streptococcus pyogenes NZ131

60.671

94.798

0.575
  recA Streptococcus pneumoniae D39

58.58

97.688

0.572
  recA Streptococcus pneumoniae TIGR4

58.58

97.688

0.572
  recA Streptococcus pneumoniae Rx1

58.58

97.688

0.572
  recA Streptococcus pneumoniae R6

58.58

97.688

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

60.245

94.509

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.697

95.376

0.569
  recA Streptococcus mutans UA159

58.16

97.399

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

94.509

0.555