Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   SMG00_RS07845 Genome accession   NZ_CP139417
Coordinates   1627955..1629001 (+) Length   348 a.a.
NCBI ID   WP_014596281.1    Uniprot ID   A0A137YBS7
Organism   Stutzerimonas stutzeri strain H46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1622955..1634001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMG00_RS07830 mutS 1623107..1625686 (-) 2580 WP_234493006.1 DNA mismatch repair protein MutS -
  SMG00_RS07835 - 1626154..1627266 (+) 1113 WP_234493005.1 acyltransferase -
  SMG00_RS07840 - 1627374..1627871 (+) 498 WP_048328794.1 CinA family protein -
  SMG00_RS07845 recA 1627955..1629001 (+) 1047 WP_014596281.1 recombinase RecA Machinery gene
  SMG00_RS07850 recX 1629007..1629474 (+) 468 WP_013982303.1 recombination regulator RecX -
  SMG00_RS07855 - 1629551..1630642 (-) 1092 WP_279641664.1 LOG family protein -
  SMG00_RS07860 - 1630755..1632164 (-) 1410 WP_014596282.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37134.57 Da        Isoelectric Point: 5.5400

>NTDB_id=909435 SMG00_RS07845 WP_014596281.1 1627955..1629001(+) (recA) [Stutzerimonas stutzeri strain H46]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQ
QIRDKLLVVSGGSSKANVVSEDLVDADL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=909435 SMG00_RS07845 WP_014596281.1 1627955..1629001(+) (recA) [Stutzerimonas stutzeri strain H46]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATTGAAAAGCAGTTCGGCAAGGGTGCAGTGATGCG
CATGGGCGATCACGATCGCCAGGCGATTCCGGCCATCTCCACCGGCTCGCTGGGTCTGGACATCGCGCTGGGCATTGGCG
GCCTGCCGAAGGGCCGGATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAGACCACTCTGACGCTGTCGGTGATTGCC
GAAGCGCAGAAGATGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGGACTACGCCGGCAAACTGGG
CGTGAATGTCGATGACCTGCTGGTTTCGCAGCCGGATACCGGCGAACAGGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
GCCCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGATATCCGTCGTACTGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGACCTCGGCGTGCAGCAGGGGCTGGTGGAGAAGTCTGGCGCCTGGTACGCCTACAAAG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAACCCGGAAATCGGTCGCGAAATCGAACAG
CAGATCCGCGACAAGCTGCTGGTGGTTTCCGGTGGTAGCAGCAAGGCGAACGTGGTCAGCGAAGACCTGGTCGACGCCGA
TCTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A137YBS7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

94.54

100

0.945

  recA Acinetobacter baylyi ADP1

73.913

99.138

0.733

  recA Acinetobacter baumannii D1279779

75.988

94.54

0.718

  recA Vibrio cholerae strain A1552

74.618

93.966

0.701

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.966

0.701

  recA Ralstonia pseudosolanacearum GMI1000

73.171

94.253

0.69

  recA Glaesserella parasuis strain SC1401

73.765

93.103

0.687

  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667

  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667

  recA Neisseria gonorrhoeae strain FA1090

71.605

93.103

0.667

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.966

0.612

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

95.977

0.595

  recA Helicobacter pylori strain NCTC11637

62.997

93.966

0.592

  recA Helicobacter pylori 26695

62.385

93.966

0.586

  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58

  recA Streptococcus mutans UA159

60

93.391

0.56

  recA Streptococcus pneumoniae R6

58.61

95.115

0.557

  recA Streptococcus pneumoniae TIGR4

58.61

95.115

0.557

  recA Streptococcus pneumoniae D39

58.61

95.115

0.557

  recA Streptococcus mitis NCTC 12261

58.61

95.115

0.557

  recA Streptococcus pneumoniae Rx1

58.61

95.115

0.557

  recA Streptococcus mitis SK321

58.308

95.115

0.555

  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.241

0.552

  recA Streptococcus pyogenes NZ131

58.232

94.253

0.549

  recA Lactococcus lactis subsp. cremoris KW2

57.276

92.816

0.532

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.678

0.523