Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SM130_RS14955 Genome accession   NZ_CP139348
Coordinates   3288985..3290028 (-) Length   347 a.a.
NCBI ID   WP_102825249.1    Uniprot ID   A0A2N8S2U9
Organism   Stutzerimonas stutzeri strain KC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3283985..3295028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS14940 (SM130_14940) - 3285757..3287166 (+) 1410 WP_102825252.1 MBL fold metallo-hydrolase -
  SM130_RS14945 (SM130_14945) - 3287281..3288372 (+) 1092 WP_102825251.1 TIGR00730 family Rossman fold protein -
  SM130_RS14950 (SM130_14950) recX 3288515..3288979 (-) 465 WP_102825250.1 recombination regulator RecX -
  SM130_RS14955 (SM130_14955) recA 3288985..3290028 (-) 1044 WP_102825249.1 recombinase RecA Machinery gene
  SM130_RS14960 (SM130_14960) - 3290112..3290609 (-) 498 WP_102825248.1 CinA family protein -
  SM130_RS14965 (SM130_14965) - 3290714..3291826 (-) 1113 WP_102825247.1 acyltransferase -
  SM130_RS14970 (SM130_14970) mutS 3292320..3294899 (+) 2580 WP_102825426.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37081.53 Da        Isoelectric Point: 5.5400

>NTDB_id=909039 SM130_RS14955 WP_102825249.1 3288985..3290028(-) (recA) [Stutzerimonas stutzeri strain KC]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEIGREIEQ
QIRDKLLVVSGGSKANVVSEDLADADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=909039 SM130_RS14955 WP_102825249.1 3288985..3290028(-) (recA) [Stutzerimonas stutzeri strain KC]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATTGAAAAGCAGTTCGGCAAGGGTGCAGTGATGCG
CATGGGCGATCATGATCGCCAGGCCATTCCGGCCATCTCTACCGGCTCGCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCCTGCCGAAGGGCCGTATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAGACCACCCTGACCCTGTCGGTGATCGCT
GAAGCGCAAAAGATGGGCGCCACCTGTGCCTTCGTCGATGCCGAACACGCGCTGGACCCGGACTATGCCGGCAAGCTGGG
CGTGAATGTCGACGACCTGCTGGTATCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
ATGCACGTCGGTCTGCAGGCACGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCGGTTCGCCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGCAGTGAA
ACCCGCGTCAAGGTAGTGAAGAACAAGGTTGCCCCGCCGTTCCGTCAAGCCGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGTAATGGCGAAGTCATCGACCTCGGTGTACAGCAGGGTCTGGTAGAGAAGTCTGGCGCCTGGTACGCCTACAAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATGCCGCCAAGTATCTGGAAGACAATCCGGAAATCGGCCGCGAAATCGAGCAG
CAGATTCGCGACAAGCTGCTTGTGGTTTCCGGCGGTAGCAAGGCGAACGTAGTCAGCGAAGATCTGGCTGACGCCGACCT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8S2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

94.813

100

0.948
  recA Acinetobacter baumannii D1279779

74.063

100

0.741
  recA Acinetobacter baylyi ADP1

77.134

94.524

0.729
  recA Vibrio cholerae strain A1552

74.924

94.236

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.236

0.706
  recA Glaesserella parasuis strain SC1401

73.765

93.372

0.689
  recA Ralstonia pseudosolanacearum GMI1000

72.256

94.524

0.683
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.372

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591
  recA Helicobacter pylori 26695

62.08

94.236

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mitis NCTC 12261

57.225

99.712

0.571
  recA Streptococcus mitis SK321

56.936

99.712

0.568
  recA Streptococcus pneumoniae R6

58.912

95.389

0.562
  recA Streptococcus pneumoniae D39

58.912

95.389

0.562
  recA Streptococcus pneumoniae TIGR4

58.912

95.389

0.562
  recA Streptococcus pneumoniae Rx1

58.912

95.389

0.562
  recA Streptococcus mutans UA159

59.692

93.66

0.559
  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527