Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SOI84_RS07195 Genome accession   NZ_CP139304
Coordinates   1428131..1429270 (-) Length   379 a.a.
NCBI ID   WP_320673869.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1341     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423131..1434270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI84_RS07175 crtD 1423862..1425376 (+) 1515 WP_320673865.1 C-3',4' desaturase CrtD -
  SOI84_RS07180 - 1425381..1426247 (-) 867 WP_320673866.1 prephenate/arogenate dehydrogenase -
  SOI84_RS07185 - 1426359..1427777 (+) 1419 WP_320673867.1 helicase -
  SOI84_RS07190 - 1427819..1428061 (+) 243 WP_320673868.1 DUF2839 domain-containing protein -
  SOI84_RS07195 recA 1428131..1429270 (-) 1140 WP_320673869.1 recombinase RecA Machinery gene
  SOI84_RS07200 - 1429419..1430195 (-) 777 WP_320673870.1 HAD family hydrolase -
  SOI84_RS07210 - 1430464..1431480 (-) 1017 WP_320673871.1 LdpA C-terminal domain-containing domain -
  SOI84_RS07215 - 1431502..1431963 (-) 462 WP_320673872.1 NAD(P)H-quinone oxidoreductase subunit N -
  SOI84_RS07220 rplC 1432371..1433027 (+) 657 WP_320673873.1 50S ribosomal protein L3 -
  SOI84_RS07225 rplD 1433027..1433662 (+) 636 WP_320675414.1 50S ribosomal protein L4 -
  SOI84_RS07230 - 1433655..1433957 (+) 303 WP_320673874.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40696.28 Da        Isoelectric Point: 8.8536

>NTDB_id=908872 SOI84_RS07195 WP_320673869.1 1428131..1429270(-) (recA) [Prochlorococcus sp. MIT 1341]
MPVEVKTSQPSNSNSRQNESGSGERDKALSLVLSQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDLVV
VDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYENDNIGQGR
DNTITWLEENPKSRDQIEMLVRKKLTEGSEVTANSMRPLAAAARTAATKKASNQVSQAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=908872 SOI84_RS07195 WP_320673869.1 1428131..1429270(-) (recA) [Prochlorococcus sp. MIT 1341]
ATGCCAGTCGAAGTAAAAACATCACAACCTTCCAATTCGAATTCACGTCAAAACGAATCAGGCTCAGGGGAAAGGGACAA
AGCACTAAGCCTTGTGCTCAGTCAAATCGAACGAAACTTTGGGAAAGGATCCATTATGCGATTGGGGGATGCTTCCAGGA
TGCGTGTGGAAACAATCTCCACCGGAGCTCTCACACTTGACCTTGCATTAGGCGGAGGGTACCCCAAAGGACGAGTGGTA
GAAGTTTATGGCCCTGAAAGCTCAGGCAAGACAACCCTCACGTTGCATGCAATTGCAGAAGTACAAAAAAGAGGTGGCGT
AGCAGCATTTGTCGATGCAGAACACGCTCTTGACCCCGTTTACGCGGCTTCCTTAGGGGTTGACATCGAAAACCTTCTGG
TCTCTCAACCAGATACAGGCGAAATGGCACTGGAAATTGTCGACCAATTAGTTCGCTCAGCCGCCGTGGATCTAGTGGTT
GTCGACTCTGTTGCAGCACTCACCCCACGATCAGAAATCGAGGGGGAAATGGGCGACCACGCCGTCGGCAGCCAAGCGCG
TCTCATGAGTCAGGCAATGAGAAAAATCACTGGCAACATAGGAAAATCAGGGTGCACCGTCATTTTTCTCAACCAATTAC
GTCTCAAAATCGGAGTAACTTATGGAAATCCAGAGACAACAACAGGTGGCAATGCGCTGAAGTTTTACGCCTCCGTCAGA
CTAGATATACGTCGTATTCAAACCTTAAAACGCGGGACAGAGGAATATGGAATTAGAGCCAAAGTCAAAGTCGCAAAGAA
CAAAGTTGCCCCTCCTTTCCGTATTGCTGAATTCGATATCCTTTTTGGCCGTGGGATCAGCACCTTGGGCTGTTTACTAG
ATTTAGCAGAAGAAACAGGTGTAGTTACACGCAAAGGCGCGTGGTACAGCTATGAAAATGACAATATTGGCCAAGGACGT
GATAACACAATCACATGGCTCGAAGAGAACCCGAAATCTCGTGACCAGATTGAAATGTTAGTCCGGAAAAAGTTAACTGA
AGGATCAGAAGTAACAGCTAATTCGATGAGACCCTTAGCAGCAGCAGCACGAACAGCAGCTACAAAAAAAGCTTCTAACC
AGGTGTCTCAAGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.559

87.335

0.573
  recA Acinetobacter baumannii D1279779

64.907

84.96

0.551
  recA Glaesserella parasuis strain SC1401

59.767

90.501

0.541
  recA Neisseria gonorrhoeae strain FA1090

59.42

91.029

0.541
  recA Neisseria gonorrhoeae MS11

59.42

91.029

0.541
  recA Neisseria gonorrhoeae MS11

59.42

91.029

0.541
  recA Pseudomonas stutzeri DSM 10701

63.354

84.96

0.538
  recA Ralstonia pseudosolanacearum GMI1000

64.63

82.058

0.53
  recA Helicobacter pylori strain NCTC11637

59.172

89.182

0.528
  recA Helicobacter pylori 26695

59.172

89.182

0.528
  recA Vibrio cholerae strain A1552

61.491

84.96

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.96

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

60.615

85.752

0.52
  recA Streptococcus pneumoniae R6

57.864

88.918

0.515
  recA Streptococcus pneumoniae Rx1

57.864

88.918

0.515
  recA Streptococcus pneumoniae D39

57.864

88.918

0.515
  recA Streptococcus pneumoniae TIGR4

57.864

88.918

0.515
  recA Lactococcus lactis subsp. cremoris KW2

55.398

92.876

0.515
  recA Streptococcus mitis NCTC 12261

56.522

91.029

0.515
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

84.697

0.512
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.44

88.654

0.509
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.433

0.501
  recA Streptococcus mitis SK321

56.886

88.127

0.501
  recA Streptococcus mutans UA159

57.846

85.752

0.496
  recA Streptococcus pyogenes NZ131

56.269

86.28

0.485
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.911

83.377

0.483