Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SOI85_RS07225 Genome accession   NZ_CP139303
Coordinates   1365751..1366887 (-) Length   378 a.a.
NCBI ID   WP_320663726.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360751..1371887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI85_RS07205 crtD 1361503..1363017 (+) 1515 WP_414477815.1 C-3',4' desaturase CrtD -
  SOI85_RS07210 - 1363014..1363880 (-) 867 WP_320663723.1 prephenate/arogenate dehydrogenase -
  SOI85_RS07215 - 1363956..1365401 (+) 1446 WP_320663724.1 helicase -
  SOI85_RS07220 - 1365438..1365686 (+) 249 WP_320663725.1 DUF2839 domain-containing protein -
  SOI85_RS07225 recA 1365751..1366887 (-) 1137 WP_320663726.1 recombinase RecA Machinery gene
  SOI85_RS07230 - 1366945..1367721 (-) 777 WP_320663727.1 HAD family hydrolase -
  SOI85_RS07240 - 1367955..1368965 (-) 1011 WP_320663728.1 LdpA C-terminal domain-containing domain -
  SOI85_RS07245 - 1368986..1369447 (-) 462 WP_320663729.1 NAD(P)H-quinone oxidoreductase subunit N -
  SOI85_RS07250 rplC 1369823..1370479 (+) 657 WP_320663730.1 50S ribosomal protein L3 -
  SOI85_RS07255 rplD 1370479..1371114 (+) 636 WP_320665157.1 50S ribosomal protein L4 -
  SOI85_RS07260 - 1371107..1371409 (+) 303 WP_320663731.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40355.14 Da        Isoelectric Point: 8.8295

>NTDB_id=908863 SOI85_RS07225 WP_320663726.1 1365751..1366887(-) (recA) [Prochlorococcus sp. MIT 1223]
MKTEANTNPSTSNGKLPVNSKSGEKEKALNLVLGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAAALGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDLVV
VDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTVGCLLDLAEETNIVTRKGAWYSYKGDNIGQGR
DNTISWLEENPESKKQIEVLVKQKLTEGSEVSSNSMKPIAAVAQKTPPIVNSKIATAA

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=908863 SOI85_RS07225 WP_320663726.1 1365751..1366887(-) (recA) [Prochlorococcus sp. MIT 1223]
ATGAAAACCGAAGCAAACACCAATCCATCCACAAGTAACGGAAAGCTACCAGTTAATTCAAAGTCTGGAGAAAAAGAAAA
AGCATTAAATCTCGTACTAGGGCAAATAGAACGAAACTTCGGCAAAGGATCGATCATGCGCCTAGGAGATGCCTCGAAGA
TGAGAGTAGAAACGATATCCACAGGTGCTCTTACGTTAGACCTTGCACTCGGGGGAGGTTATCCGAAAGGAAGAGTAGTT
GAAGTTTATGGGCCAGAAAGCTCTGGTAAAACAACATTAACCTTGCATGCAATAGCCGAAGTACAAAGGAATGGTGGAGT
AGCAGCCTTTGTTGATGCAGAGCACGCATTGGATCCTGTATATGCAGCAGCTCTGGGAGTAGATGTAGAGAATCTTCTTG
TTTCGCAACCAGATACAGGCGAGATGGCATTGGAAATTGTCGATCAACTTGTACGTTCTGCAGCCGTCGATTTAGTAGTT
GTTGACTCTGTAGCAGCACTAACCCCAAGATCAGAAATTGAAGGAGAAATGGGTGATCACGCAGTAGGAAGTCAGGCGCG
ACTAATGAGTCAAGCGATGCGCAAAATCACAGGCAATATTGGGAAATCAGGTTGCACAGTCATTTTCCTAAACCAATTAC
GCCTAAAGATTGGTATCACTTATGGAAATCCAGAAACAACAACTGGAGGAAATGCTCTTAAGTTTTATGCATCTGTCAGA
CTCGATATACGTCGCATTCAAACTCTGAAAAGAGGAACTGAAGAATACGGAATACGAGCAAAAGTCAAAGTAGCCAAGAA
CAAAGTTGCACCACCATTCCGAATCGCAGAGTTTGACATTCTATTTGGTCAAGGAATAAGTACCGTTGGTTGTTTACTCG
ACTTAGCAGAAGAAACTAATATCGTAACTAGAAAAGGTGCATGGTATAGCTATAAAGGCGATAACATTGGTCAAGGTCGA
GACAATACAATTAGTTGGCTTGAAGAAAACCCAGAATCCAAAAAACAAATTGAAGTATTAGTAAAGCAAAAACTCACAGA
AGGTTCAGAAGTTAGCTCTAATTCAATGAAACCAATAGCTGCGGTTGCACAAAAAACACCACCAATTGTAAATAGTAAAA
TAGCTACGGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.528

85.185

0.558
  recA Pseudomonas stutzeri DSM 10701

64.286

85.185

0.548
  recA Neisseria gonorrhoeae MS11

59.71

91.27

0.545
  recA Acinetobacter baumannii D1279779

63.975

85.185

0.545
  recA Neisseria gonorrhoeae MS11

59.71

91.27

0.545
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.27

0.545
  recA Vibrio cholerae strain A1552

62.733

85.185

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

85.185

0.534
  recA Glaesserella parasuis strain SC1401

58.48

90.476

0.529
  recA Helicobacter pylori 26695

59.172

89.418

0.529
  recA Helicobacter pylori strain NCTC11637

59.172

89.418

0.529
  recA Ralstonia pseudosolanacearum GMI1000

64.309

82.275

0.529
  recA Streptococcus pneumoniae Rx1

57.647

89.947

0.519
  recA Streptococcus pneumoniae D39

57.647

89.947

0.519
  recA Streptococcus pneumoniae R6

57.647

89.947

0.519
  recA Streptococcus pneumoniae TIGR4

57.647

89.947

0.519
  recA Bacillus subtilis subsp. subtilis str. 168

59.036

87.831

0.519
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.222

83.333

0.519
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.692

89.418

0.516
  recA Streptococcus mitis SK321

56.069

91.534

0.513
  recA Streptococcus mitis NCTC 12261

56.069

91.534

0.513
  recA Latilactobacillus sakei subsp. sakei 23K

58.438

84.656

0.495
  recA Lactococcus lactis subsp. cremoris KW2

55.357

88.889

0.492
  recA Streptococcus mutans UA159

58.73

83.333

0.489
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.966

85.45

0.487
  recA Streptococcus pyogenes NZ131

55.352

86.508

0.479