Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   SJN48_RS07960 Genome accession   NZ_CP139212
Coordinates   1701954..1703000 (-) Length   348 a.a.
NCBI ID   WP_002115680.1    Uniprot ID   A0A009HJZ5
Organism   Acinetobacter pittii strain WWTP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1696954..1708000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS07925 (SJN48_07950) ompH 1697204..1697704 (+) 501 WP_057068305.1 OmpH family outer membrane protein -
  SJN48_RS07930 (SJN48_07955) lpxD 1697709..1698779 (+) 1071 WP_057068303.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  SJN48_RS07935 (SJN48_07960) fabZ 1698786..1699271 (+) 486 WP_002115603.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SJN48_RS07940 (SJN48_07965) lpxA 1699268..1700056 (+) 789 WP_017385998.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  SJN48_RS07945 (SJN48_07970) - 1700115..1700987 (-) 873 WP_130120110.1 YbgF trimerization domain-containing protein -
  SJN48_RS07955 (SJN48_07980) recX 1701412..1701894 (-) 483 WP_005068912.1 regulatory protein RecX -
  SJN48_RS07960 (SJN48_07985) recA 1701954..1703000 (-) 1047 WP_002115680.1 recombinase RecA Machinery gene
  SJN48_RS07965 (SJN48_07990) hslR 1703146..1703574 (-) 429 WP_005068915.1 RNA-binding S4 domain-containing protein -
  SJN48_RS07970 (SJN48_07995) yrfG 1703558..1704244 (-) 687 WP_213073415.1 HAD-IA family hydrolase -
  SJN48_RS07975 (SJN48_08000) - 1704669..1704962 (+) 294 WP_025465974.1 hypothetical protein -
  SJN48_RS07980 (SJN48_08005) - 1705000..1705536 (-) 537 WP_130120109.1 GNAT family N-acetyltransferase -
  SJN48_RS07985 (SJN48_08010) gigD 1705566..1706015 (-) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  SJN48_RS07990 (SJN48_08015) kynU 1706163..1707413 (+) 1251 WP_130120108.1 kynureninase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37679.11 Da        Isoelectric Point: 4.9278

>NTDB_id=908112 SJN48_RS07960 WP_002115680.1 1701954..1703000(-) (recA) [Acinetobacter pittii strain WWTP]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGTNGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=908112 SJN48_RS07960 WP_002115680.1 1701954..1703000(-) (recA) [Acinetobacter pittii strain WWTP]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAGCAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACCTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAGCTGGG
CGTGGACATTGATAATCTACTTGTATCGCAACCAGATAACGGTGAACAAGCACTCGAGATTGCAGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTACAAGCTCGCCTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAATGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAGGTGAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTTAAAGAAGCTATTTTCCAAATCCTATACGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGCGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAG
ATTATCCGTGAACAACTTCTAACTACGGGTACTAATGGTGCTGTACAAGTGGAAGATGAAGAAGAAGATCTTTTATTAGA
GTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A009HJZ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.562

100

0.968

  recA Acinetobacter baylyi ADP1

92.837

100

0.931

  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721

  recA Vibrio cholerae strain A1552

74.006

93.966

0.695

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695

  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67

  recA Neisseria gonorrhoeae MS11

66.092

100

0.661

  recA Neisseria gonorrhoeae MS11

66.092

100

0.661

  recA Neisseria gonorrhoeae strain FA1090

66.092

100

0.661

  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.563

0.612

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609

  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601

  recA Helicobacter pylori 26695

63.609

93.966

0.598

  recA Streptococcus mitis SK321

59.531

97.989

0.583

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583

  recA Streptococcus mitis NCTC 12261

57.183

100

0.583

  recA Streptococcus mutans UA159

61.89

94.253

0.583

  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575

  recA Streptococcus pneumoniae D39

61.043

93.678

0.572

  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572

  recA Streptococcus pneumoniae R6

61.043

93.678

0.572

  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572

  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569

  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546

  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546