Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIM97_RS18840 Genome accession   NZ_CP139172
Coordinates   4205704..4206777 (-) Length   357 a.a.
NCBI ID   WP_129709891.1    Uniprot ID   A0A9X8P3B3
Organism   Pectobacterium zantedeschiae strain CFBP 1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4200704..4211777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIM97_RS18825 (SIM97_18815) csrA 4201896..4202081 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  SIM97_RS18830 (SIM97_18820) alaS 4202404..4205031 (-) 2628 WP_129709887.1 alanine--tRNA ligase -
  SIM97_RS18835 (SIM97_18825) recX 4205170..4205658 (-) 489 WP_129709889.1 recombination regulator RecX -
  SIM97_RS18840 (SIM97_18830) recA 4205704..4206777 (-) 1074 WP_129709891.1 recombinase RecA Machinery gene
  SIM97_RS18845 (SIM97_18835) pncC 4206885..4207379 (-) 495 WP_129709893.1 nicotinamide-nucleotide amidase -
  SIM97_RS18850 (SIM97_18840) - 4207614..4207949 (-) 336 WP_129709895.1 hypothetical protein -
  SIM97_RS18855 (SIM97_18845) - 4208430..4208918 (+) 489 WP_129709897.1 SRPBCC family protein -
  SIM97_RS18860 (SIM97_18850) - 4209001..4209675 (+) 675 WP_129709899.1 MarC family NAAT transporter -
  SIM97_RS18865 (SIM97_18855) - 4209867..4211465 (+) 1599 WP_129709901.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38260.73 Da        Isoelectric Point: 5.0716

>NTDB_id=907511 SIM97_RS18840 WP_129709891.1 4205704..4206777(-) (recA) [Pectobacterium zantedeschiae strain CFBP 1357]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPTAAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=907511 SIM97_RS18840 WP_129709891.1 4205704..4206777(-) (recA) [Pectobacterium zantedeschiae strain CFBP 1357]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTTGATATTGCTCTGGGTG
CCGGTGGTTTACCTATGGGGCGTATCGTTGAGATTTATGGCCCGGAATCTTCTGGTAAAACCACGCTGACCTTACAGGTT
ATTGCTGCCGCACAGCGCGAAGGCAAAACCTGTGCGTTCATTGATGCTGAACATGCATTAGATCCGATTTATGCGAAAAA
ACTTGGCGTAGATATCGATAATCTGCTGTGTTCTCAGCCAGATACCGGTGAACAAGCTCTGGAGATCTGTGATGCATTAA
CACGCTCTGGCGCGGTTGACGTTATCATTGTTGACTCCGTTGCAGCGTTGACGCCGAAAGCCGAAATTGAAGGCGAAATC
GGCGACTCCCATATGGGGTTGGCTGCACGTATGATGAGTCAGGCTATGCGTAAACTGGCGGGTAACCTTAAGCAAGCCAA
TACTCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTTGGTAACCCTGAAACGACTACTGGTGGTA
ACGCACTGAAGTTTTATGCATCTGTTCGCCTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAGGAAGTTGTCGGT
AGCGAAACCCGCGTTAAGGTCGTGAAGAATAAAGTGGCGGCACCGTTCAAACAGGCTGAATTCCAAATTCTCTACGGTGA
AGGCATCAATATTCACGGTGAACTGGTTGATTTGGGTGTGAAACACAAATTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGTGACAAGATCGGTCAGGGTAAAGCAAACGCCTGTAATTTCCTGAAAGAGAACCCCGCGATTGCCGCTGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAACTGACGCCTACCGCAGCGGGAAATAGCCATGATGAAGA
TGAATTCGCTGGCGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.817

99.44

0.824
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.817

99.44

0.824
  recA Pseudomonas stutzeri DSM 10701

74.336

94.958

0.706
  recA Acinetobacter baylyi ADP1

70.52

96.919

0.683
  recA Glaesserella parasuis strain SC1401

68.946

98.319

0.678
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

66.479

99.44

0.661
  recA Neisseria gonorrhoeae MS11

66.479

99.44

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.479

99.44

0.661
  recA Ralstonia pseudosolanacearum GMI1000

67.976

92.717

0.63
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535