Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SJQ66_RS26440 Genome accession   NZ_CP139170
Coordinates   2979634..2980716 (-) Length   360 a.a.
NCBI ID   WP_024901684.1    Uniprot ID   A0A0F5JY36
Organism   Robbsia andropogonis strain BLB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2974634..2985716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJQ66_RS26420 - 2975064..2975771 (-) 708 WP_024901679.1 TerC family protein -
  SJQ66_RS26425 sucD 2975996..2976877 (-) 882 WP_024901680.1 succinate--CoA ligase subunit alpha -
  SJQ66_RS26430 sucC 2977095..2978258 (-) 1164 WP_024901682.1 ADP-forming succinate--CoA ligase subunit beta -
  SJQ66_RS26435 recX 2979001..2979633 (-) 633 WP_407691526.1 recombination regulator RecX -
  SJQ66_RS26440 recA 2979634..2980716 (-) 1083 WP_024901684.1 recombinase RecA Machinery gene
  SJQ66_RS26445 - 2980960..2981706 (+) 747 WP_046153414.1 response regulator transcription factor -
  SJQ66_RS26450 - 2981706..2983535 (+) 1830 WP_320534746.1 ATP-binding protein -
  SJQ66_RS26455 - 2983881..2985503 (+) 1623 WP_162199085.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38595.31 Da        Isoelectric Point: 5.3706

>NTDB_id=907483 SJQ66_RS26440 WP_024901684.1 2979634..2980716(-) (recA) [Robbsia andropogonis strain BLB1]
MEDSKKGSNSMTADKSKALAAALAQIEKQFGKGSIMQMGVNDKPADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKLGGTCAFVDAEHALDSIYAQKLGVRLDELLISQPDTGEQALEITDSLVRSGAVDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIQKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGTSREGEVIDLGVANKIVEKAGAWYSYNGDRVGQGKDNAREFLR
ENPAIAFEIENRVREKLGIKLLPGSAPAKTAAKADVLDEE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=907483 SJQ66_RS26440 WP_024901684.1 2979634..2980716(-) (recA) [Robbsia andropogonis strain BLB1]
ATGGAAGATAGCAAGAAAGGCTCGAACAGCATGACTGCCGATAAAAGCAAGGCGCTGGCCGCGGCGCTGGCCCAAATCGA
AAAGCAGTTCGGCAAAGGGTCGATCATGCAGATGGGCGTGAACGATAAGCCTGCCGACATCCAGGTGGTGTCAACGGGTT
CGCTCGGGCTCGATATCGCGTTGGGTGTCGGCGGTCTGCCGCGCGGCCGGGTGATCGAGATCTACGGGCCGGAATCGTCG
GGTAAGACCACGTTGACGCTGCAAGTGGTTGCGGAAATGCAAAAGCTTGGTGGAACGTGCGCGTTCGTTGATGCGGAACA
TGCGCTGGATTCAATCTATGCGCAAAAGCTGGGCGTGCGCCTGGACGAATTGTTGATCTCGCAGCCGGACACCGGCGAAC
AGGCGCTGGAAATCACTGATTCGCTGGTGCGTTCCGGTGCGGTTGATCTGATTGTCATCGACTCGGTGGCCGCGTTGGTG
CCGAAGGCTGAAATCGAAGGCGAAATGGGCGATTCGCTGCCGGGTCTGCAGGCACGGCTGATGTCCCAGGCGCTGCGTAA
GCTGACGGGTACGATCCAGAAGACCAATTGCATGGTGATCTTCATCAACCAGATTCGGATGAAGATCGGCGTAATGTTCG
GTAGCCCGGAAACAACCACGGGTGGTAACGCGTTGAAGTTCTATGCGTCGGTGCGCCTGGATATTCGTCGTATCGGCTCG
ATCAAGAAGAACGATGAAGTGATCGGCAACGAAACGCGGGTAAAGGTCGTCAAGAACAAAGTCTCGCCGCCGTTCCGTGA
AGCGATTTTCGACATTTTGTACGGCGAAGGTACGTCGCGCGAAGGCGAAGTCATTGATCTGGGCGTCGCGAACAAGATCG
TCGAGAAAGCCGGTGCGTGGTACAGCTATAACGGCGATCGCGTTGGACAGGGCAAGGACAATGCGCGAGAGTTCCTGCGC
GAGAACCCGGCCATTGCTTTCGAAATCGAGAACCGCGTGCGTGAGAAGCTGGGCATCAAGTTATTGCCGGGTTCGGCGCC
GGCTAAGACGGCCGCCAAGGCCGACGTGCTTGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5JY36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.776

94.167

0.789
  recA Acinetobacter baylyi ADP1

69.628

96.944

0.675
  recA Neisseria gonorrhoeae MS11

73.112

91.944

0.672
  recA Neisseria gonorrhoeae strain FA1090

73.112

91.944

0.672
  recA Neisseria gonorrhoeae MS11

73.112

91.944

0.672
  recA Pseudomonas stutzeri DSM 10701

73.394

90.833

0.667
  recA Glaesserella parasuis strain SC1401

65.746

100

0.661
  recA Acinetobacter baumannii D1279779

72.171

90.833

0.656
  recA Vibrio cholerae strain A1552

71.254

90.833

0.647
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.254

90.833

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

93.889

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.865

95

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

90.833

0.586
  recA Helicobacter pylori 26695

63.914

90.833

0.581
  recA Helicobacter pylori strain NCTC11637

63.609

90.833

0.578
  recA Streptococcus mitis NCTC 12261

57.618

100

0.578
  recA Streptococcus mitis SK321

57.064

100

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

61.145

92.222

0.564
  recA Streptococcus pneumoniae Rx1

59.524

93.333

0.556
  recA Streptococcus pneumoniae D39

59.524

93.333

0.556
  recA Streptococcus pneumoniae R6

59.524

93.333

0.556
  recA Streptococcus pneumoniae TIGR4

59.524

93.333

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.701

93.056

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

89.167

0.547
  recA Streptococcus mutans UA159

59.697

91.667

0.547
  recA Streptococcus pyogenes NZ131

59.574

91.389

0.544