Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SFA27_RS03655 Genome accession   NZ_CP139139
Coordinates   823763..824764 (-) Length   333 a.a.
NCBI ID   WP_047379082.1    Uniprot ID   -
Organism   Chryseobacterium sp. HR92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 818763..829764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA27_RS03645 (SFA27_03630) - 818962..821853 (+) 2892 WP_407296400.1 alpha/beta hydrolase family protein -
  SFA27_RS03650 (SFA27_03635) - 822004..823437 (+) 1434 WP_407296402.1 hypothetical protein -
  SFA27_RS03655 (SFA27_03640) recA 823763..824764 (-) 1002 WP_047379082.1 recombinase RecA Machinery gene
  SFA27_RS03660 (SFA27_03645) - 825072..826256 (-) 1185 WP_407296405.1 oxygenase MpaB family protein -
  SFA27_RS03665 (SFA27_03650) - 826336..827133 (-) 798 WP_407296407.1 response regulator transcription factor -
  SFA27_RS03670 (SFA27_03655) - 827328..828254 (+) 927 WP_407296409.1 hypothetical protein -
  SFA27_RS03675 (SFA27_03660) gap 828318..829322 (-) 1005 WP_124535023.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35898.27 Da        Isoelectric Point: 5.5619

>NTDB_id=907340 SFA27_RS03655 WP_047379082.1 823763..824764(-) (recA) [Chryseobacterium sp. HR92]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDQSIDNTIEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPDLSE
ELENKIKEEMKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=907340 SFA27_RS03655 WP_047379082.1 823763..824764(-) (recA) [Chryseobacterium sp. HR92]
ATGAGTAACATTGATGATAAGAAAAAAGCACTTGCTTTAGTGCTTGACAAATTAGATAAAACATACGGAAAAGGAACTGT
AATGACTTTAGGTGATCAATCTATAGACAATACAATAGAAGTAATTCCTTCCGGTTCTTTAGGATTAGATATTGCTTTAG
GTATAGGTGGATATCCAAAAGGAAGAATCATTGAAATATATGGTCCTGAATCTTCAGGTAAAACAACTTTGACCCTTCAT
GCTATTGCTGAGGCTCAAAAAGCAGGTGGTATTGCTGCATTCATTGATGCAGAGCACGCTTTCGACAGAACTTATGCTGC
GAAATTAGGAATTGATCTTGAAAACCTGATCATTTCTCAGCCGGACAATGGTGAGCAGGCTTTAGAAATTGCTGATAACC
TTATCCGTTCCGGAGCTATTGATATCGTTGTAATTGACTCCGTAGCGGCTCTTACACCAAAAGCAGAGATCGAAGGGGAA
ATGGGAGATTCCAAAATGGGACTTCACGCAAGATTAATGTCTCAGGCATTAAGAAAATTGACTGCTACTATTTCAAGAAC
AAAATGTACAGTAATCTTCATCAATCAGTTGAGAGAAAAGATCGGTGTAATGTTCGGAAACCCTGAAACAACTACCGGAG
GTAATGCTCTTAAGTTCTATGCTTCTGTAAGAATTGATATCAGAAAAGCAAGTGCACCTATCAAGCAAGGTGACGAAGCT
ATCGGTAGCCGTGTGAAAGTGAAAATTGTGAAAAACAAAGTAGCACCTCCTTTCAAGCAGGCAGAATTCGATATCATGTA
TGGAGAAGGAGTTTCTAAAGTTGGTGAAATTCTTGATACTGCCGTAGATATGGGAATTGTGAAGAAAAGCGGATCTTGGT
TCAGCTACGAAGAGACTAAACTTGGTCAGGGACGTGATGCTGTAAAAGATGTTTTAAAAGATAATCCTGATCTTTCCGAA
GAATTGGAAAACAAGATCAAAGAGGAAATGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.88

100

0.799
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Acinetobacter baumannii D1279779

64.11

97.898

0.628
  recA Glaesserella parasuis strain SC1401

63.804

97.898

0.625
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

97.898

0.616
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Neisseria gonorrhoeae strain FA1090

62.539

96.997

0.607
  recA Ralstonia pseudosolanacearum GMI1000

64.537

93.994

0.607
  recA Pseudomonas stutzeri DSM 10701

61.043

97.898

0.598
  recA Streptococcus pyogenes NZ131

60.856

98.198

0.598
  recA Streptococcus mitis SK321

60.736

97.898

0.595
  recA Streptococcus mitis NCTC 12261

60.736

97.898

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.898

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.271

98.799

0.586
  recA Vibrio cholerae strain A1552

59.271

98.799

0.586
  recA Streptococcus mutans UA159

59.633

98.198

0.586
  recA Streptococcus pneumoniae Rx1

59.385

97.598

0.58
  recA Streptococcus pneumoniae D39

59.385

97.598

0.58
  recA Streptococcus pneumoniae R6

59.385

97.598

0.58
  recA Streptococcus pneumoniae TIGR4

59.385

97.598

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

58.824

96.997

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

97.898

0.55