Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SGY26_RS02180 Genome accession   NZ_CP139083
Coordinates   449158..450351 (+) Length   397 a.a.
NCBI ID   WP_151494048.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain M115-8W-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 444158..455351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGY26_RS02160 (SGY26_02160) - 444864..446846 (+) 1983 WP_151494046.1 fructose-specific PTS transporter subunit EIIC -
  SGY26_RS02165 (SGY26_02165) - 446895..447233 (+) 339 WP_409046702.1 hypothetical protein -
  SGY26_RS02170 (SGY26_02170) - 447428..447901 (+) 474 WP_003567848.1 hypothetical protein -
  SGY26_RS02175 (SGY26_02175) - 448059..448757 (-) 699 WP_003567846.1 DUF554 domain-containing protein -
  SGY26_RS02180 (SGY26_02180) recA 449158..450351 (+) 1194 WP_151494048.1 recombinase RecA Machinery gene
  SGY26_RS02185 (SGY26_02185) - 450656..451858 (-) 1203 WP_343582102.1 PLP-dependent aminotransferase family protein -
  SGY26_RS02190 (SGY26_02190) - 452108..453010 (+) 903 WP_151494049.1 LysR family transcriptional regulator -
  SGY26_RS02195 (SGY26_02195) - 453016..453498 (-) 483 WP_151494050.1 ribonuclease H -
  SGY26_RS02200 (SGY26_02200) - 453595..454407 (+) 813 WP_003567836.1 Cof-type HAD-IIB family hydrolase -
  SGY26_RS02205 (SGY26_02205) - 454452..455138 (+) 687 WP_003567833.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43044.73 Da        Isoelectric Point: 5.1689

>NTDB_id=907101 SGY26_RS02180 WP_151494048.1 449158..450351(+) (recA) [Lacticaseibacillus paracasei strain M115-8W-2]
MAKKTTAKNDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEEKIREQVAPKKPEETDEKQDDKKDDQSSADKKTEKTTTTDTEKKADKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=907101 SGY26_RS02180 WP_151494048.1 449158..450351(+) (recA) [Lacticaseibacillus paracasei strain M115-8W-2]
ATGGCTAAGAAAACGACCGCAAAGAATGATAATACTAAATCCGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCGGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCGCGTGGCCGAATCGTTGAAGTCTATGGTCCT
GAAAGTACTGGGAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGACCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTTGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGTGCCATCGGGGATAGCCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAATAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTGACACCGGGCGGCCGTGCCTTGAAATTCTATGCGTCTGTACGGATTGAAGTCAAGCGT
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGGATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGACGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AATGCATCTCACTACTTGGATGAACATCCGGAAATTTCTAAGGAAATCGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAACCGATGAGAAGCAGGATGATAAGAAAGACGATCAGTCATCTGCTGATAAAAAGACCGAAAAGACAA
CGACCACTGATACTGAAAAGAAAGCCGACAAGAAAGATGACCCTGCCAGCTTCGGGGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

56.878

95.214

0.542
  recA Streptococcus mitis SK321

56.614

95.214

0.539
  recA Streptococcus mutans UA159

56.836

93.955

0.534
  recA Streptococcus pneumoniae TIGR4

57.493

92.443

0.531
  recA Streptococcus pneumoniae R6

57.493

92.443

0.531
  recA Streptococcus pneumoniae Rx1

57.493

92.443

0.531
  recA Streptococcus pneumoniae D39

57.493

92.443

0.531
  recA Streptococcus pyogenes NZ131

59.71

86.902

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.598

85.894

0.486
  recA Glaesserella parasuis strain SC1401

50.933

94.458

0.481
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.672

89.169

0.479
  recA Acinetobacter baylyi ADP1

54.81

86.398

0.474
  recA Pseudomonas stutzeri DSM 10701

58.075

81.108

0.471
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Acinetobacter baumannii D1279779

55.657

82.368

0.458
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.093

0.456
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.211

82.368

0.438
  recA Vibrio cholerae strain A1552

53.211

82.368

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.469

81.612

0.428
  recA Helicobacter pylori strain NCTC11637

51.368

82.872

0.426
  recA Helicobacter pylori 26695

51.368

82.872

0.426