Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIN07_RS03345 Genome accession   NZ_CP139080
Coordinates   720254..721336 (+) Length   360 a.a.
NCBI ID   WP_057774679.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain WiKim0108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715254..726336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIN07_RS03325 (SIN07_03325) yfmH 716373..717677 (+) 1305 WP_063697920.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SIN07_RS03330 (SIN07_03330) ymfI 717674..718399 (+) 726 WP_057774671.1 elongation factor P 5-aminopentanone reductase -
  SIN07_RS03335 (SIN07_03335) - 718469..719347 (+) 879 WP_057774674.1 DUF4115 domain-containing protein -
  SIN07_RS03340 (SIN07_03340) pgsA 719363..719947 (+) 585 WP_057774676.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SIN07_RS03345 (SIN07_03345) recA 720254..721336 (+) 1083 WP_057774679.1 recombinase RecA Machinery gene
  SIN07_RS03350 (SIN07_03350) - 721438..722679 (-) 1242 WP_063697918.1 ISL3 family transposase -
  SIN07_RS03355 (SIN07_03355) rny 723022..724581 (+) 1560 WP_057774682.1 ribonuclease Y -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 39176.46 Da        Isoelectric Point: 5.2483

>NTDB_id=907072 SIN07_RS03345 WP_057774679.1 720254..721336(+) (recA) [Pediococcus inopinatus strain WiKim0108]
MADDQRKVALDAALKKIEKNFGKGSIMRMGDSAQTQISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AQVQKEGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKDGTDIIGN
RVRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIIDMAAEKDIIQKSGSWYSYAEERIGQGRENAKQYLEDNPEKREEIY
KKVRVAFGMDETPEEKDAAQEKSKEEKDPSTLDLKTSKKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=907072 SIN07_RS03345 WP_057774679.1 720254..721336(+) (recA) [Pediococcus inopinatus strain WiKim0108]
TTGGCTGATGATCAAAGAAAAGTAGCGTTAGACGCTGCGTTAAAAAAAATTGAAAAGAATTTTGGTAAGGGCTCTATTAT
GCGAATGGGGGATTCTGCTCAAACTCAAATCTCTACCATTTCTACCGGTTCTTTAGCATTAGATGATGCACTGGGTGTTG
GTGGCTATCCTCGTGGAAGAATCGTTGAAGTCTATGGACCAGAAAGTTCTGGTAAGACAACGGTTGCTCTGCATGCGGTT
GCGCAGGTTCAAAAAGAGGGCGGAACAGCTGCCTATATTGATGCAGAAAATGCATTAGATCCAGTGTACGCAGAACACTT
GGGTGTTAATATTGATGACTTGCTGTTGTCTCAGCCAGATACAGGTGAAGAAGGTCTAGAAATTACAGACGCCTTGGTAT
CAAGTGGGGCTGTTGATTTAGTTGTTGTGGACTCGGTTGCTGCCTTAGTTCCACGTGCAGAAATTGAAGGTGAAATGGGT
GATGCCCATGTTGGCCTTCAAGCACGGCTTATGTCACAGGCACTTCGGAAACTTTCTGGTTCAATTAATAAAACTAAAAC
AATTGCCATTTTTATTAATCAGATTCGTGAAAAAGTCGGTGTTATGTTTGGTAATCCCGAAATCACACCTGGTGGTCGTG
CTCTGAAGTTTTATGCAACCATCCGTTTAGAGGTTCGACGTGCAGAACAAATTAAAGACGGTACTGATATTATCGGAAAC
CGAGTTCGGATTAAAGTCGTTAAGAACAAGGTTGCACCTCCATTTAAGCGTGCCGAAGTTGACATCATGTACGGTCACGG
AATTTCTCAAACTGGTGAGATTATTGATATGGCTGCTGAAAAGGACATTATCCAAAAGAGTGGTTCTTGGTATTCATATG
CTGAGGAACGCATTGGACAAGGTCGAGAAAACGCTAAGCAGTATTTAGAAGACAATCCGGAAAAGCGAGAAGAAATTTAT
AAAAAAGTTCGTGTCGCGTTTGGAATGGATGAAACACCCGAAGAAAAAGATGCAGCACAAGAAAAATCAAAAGAAGAGAA
AGATCCTTCTACACTAGATCTTAAAACATCTAAAAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.687

93.056

0.769
  recA Bacillus subtilis subsp. subtilis str. 168

74.545

91.667

0.683
  recA Streptococcus pyogenes NZ131

69.014

98.611

0.681
  recA Streptococcus mitis NCTC 12261

68.245

99.722

0.681
  recA Streptococcus mitis SK321

67.967

99.722

0.678
  recA Streptococcus mutans UA159

67.131

99.722

0.669
  recA Streptococcus pneumoniae Rx1

67.919

96.111

0.653
  recA Streptococcus pneumoniae D39

67.919

96.111

0.653
  recA Streptococcus pneumoniae R6

67.919

96.111

0.653
  recA Streptococcus pneumoniae TIGR4

67.919

96.111

0.653
  recA Lactococcus lactis subsp. cremoris KW2

66.766

92.778

0.619
  recA Neisseria gonorrhoeae strain FA1090

62.236

91.944

0.572
  recA Neisseria gonorrhoeae MS11

62.236

91.944

0.572
  recA Neisseria gonorrhoeae MS11

62.236

91.944

0.572
  recA Ralstonia pseudosolanacearum GMI1000

64.353

88.056

0.567
  recA Acinetobacter baylyi ADP1

58.382

96.111

0.561
  recA Pseudomonas stutzeri DSM 10701

62.733

89.444

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

91.111

0.558
  recA Vibrio cholerae strain A1552

62.112

89.444

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.444

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

90

0.553
  recA Glaesserella parasuis strain SC1401

61.371

89.167

0.547
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.878

91.389

0.547
  recA Acinetobacter baumannii D1279779

60.559

89.444

0.542
  recA Helicobacter pylori 26695

57.273

91.667

0.525
  recA Helicobacter pylori strain NCTC11637

57.273

91.667

0.525