Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SDC64_RS06735 Genome accession   NZ_CP139048
Coordinates   1442015..1443058 (-) Length   347 a.a.
NCBI ID   WP_005090091.1    Uniprot ID   A0A372MQS9
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1437015..1448058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS06705 (SDC64_06705) - 1437193..1437648 (+) 456 WP_004639427.1 phasin family protein -
  SDC64_RS06710 (SDC64_06710) - 1437818..1438090 (+) 273 WP_004639426.1 HU family DNA-binding protein -
  SDC64_RS06715 (SDC64_06715) - 1438230..1440101 (+) 1872 WP_004639425.1 SurA N-terminal domain-containing protein -
  SDC64_RS06720 (SDC64_06720) - 1440172..1440981 (-) 810 WP_004639424.1 YbgF trimerization domain-containing protein -
  SDC64_RS06730 (SDC64_06730) - 1441421..1441903 (-) 483 WP_005082704.1 regulatory protein RecX -
  SDC64_RS06735 (SDC64_06735) recA 1442015..1443058 (-) 1044 WP_005090091.1 recombinase RecA Machinery gene
  SDC64_RS06740 (SDC64_06740) - 1443230..1443658 (-) 429 WP_004639420.1 RNA-binding S4 domain-containing protein -
  SDC64_RS06745 (SDC64_06745) - 1443642..1444343 (-) 702 WP_320533328.1 HAD-IA family hydrolase -
  SDC64_RS06750 (SDC64_06750) - 1444355..1445212 (+) 858 WP_320533329.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  SDC64_RS06755 (SDC64_06755) - 1445266..1446000 (+) 735 WP_004639417.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37698.08 Da        Isoelectric Point: 4.9359

>NTDB_id=906955 SDC64_RS06735 WP_005090091.1 1442015..1443058(-) (recA) [Acinetobacter haemolyticus strain JS-1us]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAQEIEK
LIREQLLTKNNNEAAAVEEDELDLLES

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=906955 SDC64_RS06735 WP_005090091.1 1442015..1443058(-) (recA) [Acinetobacter haemolyticus strain JS-1us]
ATGGATGATAATAAAAGTAAAGCGTTACAAGCCGCTTTAAGCCAAATTGAAAAACAATTTGGTAAAAACACAGTGATGCG
CTTAGGTGATAATACCGTACAAGCAGTTGAAGCTGTATCAACGGGTTCTTTAACACTTGATATTGCGCTTGGTATTGGTG
GTTTACCCAAAGGGCGTATCATTGAAATCTATGGACCAGAATCTTCTGGTAAAACCACAATGACTTTGCAAGCCATTGCT
CAATGCCAAAAAACTGGTGGTACATGTGCATTTATCGATGCAGAGCATGCCTTAGACCCTGAATATGCACGTAAATTAGG
CGTAGATATTGACAACTTGTTGGTTTCACAACCTGACAACGGTGAACAAGCATTAGAGATTGCGGATATGCTAGTTCGTT
CTGGCGCAATTGATCTTATCGTTGTCGACTCCGTTGCAGCCCTCACCCCTAAAGCGGAAATTGAAGGCGAAATGGGCGAT
TCACATATGGGCTTACAAGCACGTCTGATGAGTCAGGCATTGCGTAAAATCACTGGTAATGCGAAGCGCTCAAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGCGTTATGTTTGGTAGCCCTGAAACAACGACTGGTGGTAATGCAC
TTAAATTCTATGCATCTGTACGCTTAGACATCCGCCGTATCGGTGCAGTGAAAGAAGGTGATGAAATCACCGGTAATGAA
ACTCGCGTTAAAGTTGTTAAAAATAAAATGGCACCGCCTTTCAAAGAAGCAGTGTTCCAGATCATGTATGGTAAAGGTAC
AAATCAACTAGGTGAACTGGTTGATCTTGCAGTTCAACAAGATATCGTTCAAAAAGCAGGTGCTTGGTACTCTTATCAAG
GCAATAAAATCGGTCAAGGTAAGAATAATGTCATCCGCCATTTTGAAGAAAACCCACAAATGGCACAAGAAATTGAAAAG
CTTATTCGTGAACAGCTTCTAACAAAGAACAACAACGAAGCCGCAGCAGTGGAAGAAGATGAGCTAGATCTTCTAGAAAG
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372MQS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.775

99.712

0.925
  recA Acinetobacter baylyi ADP1

91.117

100

0.916
  recA Pseudomonas stutzeri DSM 10701

73.837

99.135

0.732
  recA Vibrio cholerae strain A1552

73.716

95.389

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.716

95.389

0.703
  recA Glaesserella parasuis strain SC1401

68.622

98.271

0.674
  recA Ralstonia pseudosolanacearum GMI1000

66.193

100

0.671
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae MS11

68.827

93.372

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.372

0.643
  recA Helicobacter pylori strain NCTC11637

61.96

100

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.254

0.617
  recA Helicobacter pylori 26695

61.383

100

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Streptococcus mitis SK321

59.078

100

0.591
  recA Streptococcus mitis NCTC 12261

59.531

98.271

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.778

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.585

94.524

0.582
  recA Streptococcus mutans UA159

59.644

97.118

0.579
  recA Streptococcus pyogenes NZ131

61.846

93.66

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.084

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.507

0.55