Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SJY35_RS14990 Genome accession   NZ_CP139001
Coordinates   3274548..3275648 (-) Length   366 a.a.
NCBI ID   WP_396587442.1    Uniprot ID   -
Organism   Bermanella sp. R86510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3269548..3280648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY35_RS14970 - 3270058..3270852 (-) 795 WP_396587438.1 DUF547 domain-containing protein -
  SJY35_RS14975 - 3270854..3273004 (-) 2151 WP_396587439.1 FAD-dependent oxidoreductase -
  SJY35_RS14980 - 3273034..3273846 (-) 813 WP_396587440.1 class I SAM-dependent methyltransferase -
  SJY35_RS14985 - 3273955..3274458 (-) 504 WP_396587441.1 regulatory protein RecX -
  SJY35_RS14990 recA 3274548..3275648 (-) 1101 WP_396587442.1 recombinase RecA Machinery gene
  SJY35_RS14995 - 3275795..3276292 (-) 498 WP_396587443.1 CinA family protein -
  SJY35_RS15000 katG 3276423..3278618 (-) 2196 WP_396587444.1 catalase/peroxidase HPI -
  SJY35_RS15005 - 3278769..3279524 (-) 756 WP_396587445.1 SDR family NAD(P)-dependent oxidoreductase -
  SJY35_RS15010 - 3279658..3280011 (-) 354 WP_396587446.1 DUF1428 domain-containing protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39218.99 Da        Isoelectric Point: 5.8355

>NTDB_id=906696 SJY35_RS14990 WP_396587442.1 3274548..3275648(-) (recA) [Bermanella sp. R86510]
MDQNRQKALDAALGQIERQFGKGAIMKMGEHPREAIPAVSTGSLTLDIALGIGGLPYGRIVEIYGPESSGKTTMCLSAMA
QAQKDGKTVAIVDAEHALDPLYAEKLGVDLDSLLVSQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRAEIEGDMGD
SHVGLQARLMSQALRKLTANVKNANCMVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKNGEEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYNQGINHEAEIIDLGVKLGLVDKSGAWYAYKGDKIGQGKANACVYLQENPAISQEIEK
QIRDQLLVVVSPEKAKAKEEAIVDEGAATAEAKPATKKASKAKEEA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=906696 SJY35_RS14990 WP_396587442.1 3274548..3275648(-) (recA) [Bermanella sp. R86510]
ATGGATCAGAATCGCCAAAAAGCCCTAGACGCAGCCCTTGGACAAATCGAACGCCAATTTGGTAAAGGCGCCATCATGAA
AATGGGCGAGCATCCCAGAGAAGCCATTCCTGCGGTTTCCACAGGCTCATTAACATTAGATATTGCATTGGGCATTGGTG
GTCTACCTTATGGCCGTATTGTTGAAATTTACGGCCCAGAATCATCAGGTAAAACAACCATGTGTTTGTCGGCTATGGCA
CAAGCACAAAAAGACGGTAAAACCGTGGCTATTGTCGATGCTGAGCACGCTCTAGACCCACTGTATGCGGAAAAACTTGG
CGTAGACTTAGACAGCTTATTAGTTTCTCAGCCCGATACTGGTGAGCAAGCGCTAGAAATCGTTGATAGCCTAGTGCGTT
CAGGCGCAGTTGATATGATTGTTGTCGACTCGGTAGCAGCACTAACGCCACGTGCTGAAATCGAAGGCGACATGGGTGAC
TCTCACGTTGGTTTGCAAGCACGTCTTATGTCGCAAGCACTGCGTAAACTAACGGCCAATGTTAAAAATGCAAATTGTAT
GGTGGTCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAACCCAGAAACCACAACCGGTGGTAATGCAC
TAAAATTCTACTCTTCTGTTCGTTTAGATATTCGTCGTACTGGCGCAGTTAAGAACGGCGAAGAAGTAGTGGGTAATGAA
ACCCGTGTGAAAGTGGTTAAAAATAAGGTTGCACCGCCATTCAAGCAAGCCGAATTCCAAATCATGTATAACCAAGGCAT
TAACCACGAAGCCGAAATCATCGATTTAGGCGTGAAGCTAGGTTTGGTTGATAAATCAGGCGCTTGGTATGCTTACAAAG
GCGATAAGATTGGTCAGGGTAAAGCCAATGCTTGTGTATACTTGCAAGAGAACCCAGCTATAAGCCAAGAAATTGAAAAA
CAAATTCGTGACCAGTTATTGGTTGTGGTTTCTCCAGAAAAAGCAAAAGCGAAAGAAGAAGCCATTGTGGATGAAGGTGC
TGCTACAGCAGAAGCTAAGCCGGCGACCAAAAAAGCGTCTAAGGCAAAAGAAGAAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.453

93.989

0.719
  recA Vibrio cholerae strain A1552

74.006

89.344

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

89.344

0.661
  recA Acinetobacter baylyi ADP1

71.091

92.623

0.658
  recA Acinetobacter baumannii D1279779

72.171

89.344

0.645
  recA Neisseria gonorrhoeae MS11

72.222

88.525

0.639
  recA Neisseria gonorrhoeae MS11

72.222

88.525

0.639
  recA Neisseria gonorrhoeae strain FA1090

72.222

88.525

0.639
  recA Glaesserella parasuis strain SC1401

70.679

88.525

0.626
  recA Ralstonia pseudosolanacearum GMI1000

68.489

84.973

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

89.344

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

64.596

87.978

0.568
  recA Streptococcus mutans UA159

58.166

95.355

0.555
  recA Streptococcus pneumoniae Rx1

58.261

94.262

0.549
  recA Streptococcus pneumoniae TIGR4

58.261

94.262

0.549
  recA Streptococcus pneumoniae R6

58.261

94.262

0.549
  recA Streptococcus pneumoniae D39

58.261

94.262

0.549
  recA Helicobacter pylori strain NCTC11637

61.468

89.344

0.549
  recA Streptococcus mitis NCTC 12261

58.824

92.896

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.88

91.257

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

60.303

90.164

0.544
  recA Streptococcus mitis SK321

58.187

93.443

0.544
  recA Helicobacter pylori 26695

60.856

89.344

0.544
  recA Streptococcus pyogenes NZ131

59.443

88.251

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.751

89.891

0.519
  recA Lactococcus lactis subsp. cremoris KW2

55.728

88.251

0.492