Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB51_RS04640 Genome accession   NZ_CP138987
Coordinates   999163..1000206 (-) Length   347 a.a.
NCBI ID   WP_058093111.1    Uniprot ID   A0A142FV83
Organism   Marinobacter sp. MIT0238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994163..1005206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB51_RS04620 fixJ 994994..995614 (-) 621 WP_058093114.1 response regulator FixJ -
  SIB51_RS04625 - 995653..998061 (-) 2409 WP_058093113.1 Lon protease family protein -
  SIB51_RS04630 - 998301..998678 (+) 378 WP_058093151.1 PilZ domain-containing protein -
  SIB51_RS04635 - 998679..999140 (-) 462 WP_058093112.1 flavodoxin family protein -
  SIB51_RS04640 recA 999163..1000206 (-) 1044 WP_058093111.1 recombinase RecA Machinery gene
  SIB51_RS04645 pncC 1000370..1000870 (-) 501 WP_058093110.1 nicotinamide-nucleotide amidase -
  SIB51_RS04650 mutS 1000974..1003607 (+) 2634 WP_058093109.1 DNA mismatch repair protein MutS -
  SIB51_RS04655 fdxA 1003771..1004094 (+) 324 WP_058093108.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37336.00 Da        Isoelectric Point: 5.5419

>NTDB_id=906545 SIB51_RS04640 WP_058093111.1 999163..1000206(-) (recA) [Marinobacter sp. MIT0238]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFIDAEHALDPIYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAIDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENIDIANEIEA
KVRDKLMPKPVKKEAAEAPAEANGELL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=906545 SIB51_RS04640 WP_058093111.1 999163..1000206(-) (recA) [Marinobacter sp. MIT0238]
ATGGAAGACAATCGCAAGAAAGCACTCAGCGCAGCACTCGGCCAGATTGAGCGCCAGTTCGGCAAAGGTGCCGTGATGAA
AATGGGCGACCAGCCCCGTGAAGCCATTCCTGCGGTATCCACCGGTTCCCTCGGGCTGGACGTCGCCCTGGGTATTGGCG
GTCTGCCTTACGGCCGGATCGTTGAAATCTACGGCCCGGAAAGCTCCGGTAAAACCACACTGACCCTTCAGGTGATTGCG
GAAGCCCAAAAGGCCGGAAAAACCTGCGCCTTCATTGACGCCGAGCACGCGCTCGACCCCATTTACGCGGAAAAGCTGGG
CGTAAACGTAGACGACCTGCTGGTGTCCCAGCCAGACACCGGCGAACAGGCCCTGGAAATCGCCGACATGCTGGTGCGCT
CCAACGCCATTGACGTGATCATCGTCGACTCCGTTGCCGCACTGACACCGAAAGCCGAAATCGAAGGCGAGATGGGCGAC
AGCCACGTAGGCCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGTAAACTGACCGGTAACGTCAAACACGCCAACTGCCT
GATGGTCTTCATCAACCAGATCCGTATGAAAATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAATTCTACTCCTCCGTACGCCTGGACATCCGCCGCATCGGTGCTGTCAAAGAGGGCGACGAAGTGGTCGGTAACGAA
ACCCGCGTAAAAGTCGTCAAGAACAAGGTATCTCCGCCCTTCAAACAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
CTACCACATGGCCGAAGTGCTGGACATGGGCGTTAAAGAAGGCTTCGTCGACAAATCCGGCGCCTGGTACGCCTACAACG
GCGACAAAATCGGCCAGGGCAAAGCCAACGCCTGCAAGTTCCTGGAAGAGAACATCGACATCGCCAACGAAATCGAAGCC
AAGGTTCGCGACAAGCTGATGCCCAAGCCGGTGAAGAAAGAGGCGGCAGAAGCGCCCGCGGAAGCGAACGGTGAATTGCT
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FV83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.551

99.424

0.781
  recA Acinetobacter baylyi ADP1

71.47

100

0.715
  recA Glaesserella parasuis strain SC1401

69.364

99.712

0.692
  recA Acinetobacter baumannii D1279779

73.394

94.236

0.692
  recA Vibrio cholerae strain A1552

73.089

94.236

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

94.236

0.689
  recA Ralstonia pseudosolanacearum GMI1000

70.294

97.983

0.689
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.372

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Helicobacter pylori strain NCTC11637

61.424

97.118

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

95.965

0.591
  recA Helicobacter pylori 26695

60.831

97.118

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

60.87

92.795

0.565
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.372

0.545
  recA Streptococcus pneumoniae Rx1

57.669

93.948

0.542
  recA Streptococcus pneumoniae D39

57.669

93.948

0.542
  recA Streptococcus pneumoniae R6

57.669

93.948

0.542
  recA Streptococcus pneumoniae TIGR4

57.669

93.948

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.084

0.542
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Streptococcus mitis NCTC 12261

57.585

93.084

0.536
  recA Streptococcus mitis SK321

57.276

93.084

0.533