Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB81_RS07340 Genome accession   NZ_CP138981
Coordinates   1303846..1304943 (-) Length   365 a.a.
NCBI ID   WP_032520050.1    Uniprot ID   A0A0A2B3T1
Organism   Prochlorococcus marinus str. SB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298846..1309943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB81_RS07320 crtD 1299690..1301195 (+) 1506 WP_032520045.1 C-3',4' desaturase CrtD -
  SIB81_RS07325 - 1301185..1302024 (-) 840 WP_032520047.1 prephenate/arogenate dehydrogenase -
  SIB81_RS07330 - 1302120..1303568 (+) 1449 WP_032520048.1 DNA helicase -
  SIB81_RS07335 - 1303598..1303843 (+) 246 WP_032520049.1 DUF2839 domain-containing protein -
  SIB81_RS07340 recA 1303846..1304943 (-) 1098 WP_032520050.1 recombinase RecA Machinery gene
  SIB81_RS07345 - 1305057..1305833 (-) 777 WP_032520051.1 HAD family hydrolase -
  SIB81_RS07355 - 1306015..1307022 (-) 1008 WP_032520053.1 LdpA C-terminal domain-containing domain -
  SIB81_RS07360 ndhN 1307028..1307504 (-) 477 WP_032520054.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB81_RS07365 rplC 1307782..1308435 (+) 654 WP_032520055.1 50S ribosomal protein L3 -
  SIB81_RS07370 rplD 1308432..1309064 (+) 633 WP_032520057.1 50S ribosomal protein L4 -
  SIB81_RS07375 - 1309061..1309363 (+) 303 WP_032520059.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39443.14 Da        Isoelectric Point: 6.7393

>NTDB_id=906461 SIB81_RS07340 WP_032520050.1 1303846..1304943(-) (recA) [Prochlorococcus marinus str. SB]
MSLEEKKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKDKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906461 SIB81_RS07340 WP_032520050.1 1303846..1304943(-) (recA) [Prochlorococcus marinus str. SB]
ATGAGCCTTGAAGAGAAGAAAAAAACTGAATCCAAAGAAAAAGACAAGGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGATCAATAATGAGACTTGGTGACGCATCAAGAATGAAAGTAGAAACAATATCTACTGGAGCGCTCA
CCTTAGATTTAGCATTAGGAGGAGGCTATCCAAAAGGTAGAGTAGTAGAAGTTTATGGACCAGAAAGTTCAGGAAAAACT
ACATTAACGTTGCACGCGATTGCGGAAGTACAAAAGAATGGAGGAGTAGCAGCATTTGTGGATGCTGAGCATGCACTCGA
TCCAGTTTATGCAGCCTCCTTAGGAGTTGATGTTGAAAATTTGCTAGTTTCACAACCAGATACAGGTGAAATGGCTCTGG
AAATAGTTGACCAACTTATAAGATCAAGTGCAGTAGATCTTGTTGTTGTTGACTCGGTCGCAGCATTAACCCCAAGAGCT
GAGATAGAAGGGGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGCCAGGCAATGAGGAAAATAACAGG
AAATATTGGTAAATCTGGATGTACGGTAATATTCCTAAATCAACTACGCCTAAAAATTGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTAAAATTTTATGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTCGCGCCACCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGACTTAGCAGAAGAGACTAATATCATAATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATCAGGAACAAAGTAGAATCAATGGTTAAAGATAAGTTAACAGAAGGAACTGAAGTGAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAATACAATCGCTGTTAATGATATAAAAACTGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2B3T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.907

88.219

0.573
  recA Acinetobacter baumannii D1279779

63.609

89.589

0.57
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

63.987

85.205

0.545
  recA Helicobacter pylori 26695

59.819

90.685

0.542
  recA Helicobacter pylori strain NCTC11637

59.819

90.685

0.542
  recA Vibrio cholerae strain A1552

61.18

88.219

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

88.219

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

90.137

0.534
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

87.945

0.523
  recA Streptococcus mitis SK321

57.186

91.507

0.523
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51