Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIC10_RS04130 Genome accession   NZ_CP138979
Coordinates   693381..694478 (+) Length   365 a.a.
NCBI ID   WP_011819174.1    Uniprot ID   A2BTE1
Organism   Prochlorococcus sp. MIT 9321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688381..699478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC10_RS04095 - 688961..689263 (-) 303 WP_011377190.1 50S ribosomal protein L23 -
  SIC10_RS04100 rplD 689260..689892 (-) 633 WP_032517883.1 50S ribosomal protein L4 -
  SIC10_RS04105 rplC 689892..690542 (-) 651 WP_032517885.1 50S ribosomal protein L3 -
  SIC10_RS04110 ndhN 690822..691298 (+) 477 WP_032517886.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIC10_RS04115 - 691304..692302 (+) 999 WP_032517887.1 LdpA C-terminal domain-containing domain -
  SIC10_RS04125 - 692493..693269 (+) 777 WP_032517888.1 HAD family hydrolase -
  SIC10_RS04130 recA 693381..694478 (+) 1098 WP_011819174.1 recombinase RecA Machinery gene
  SIC10_RS04135 - 694484..694726 (-) 243 WP_032517889.1 DUF2839 domain-containing protein -
  SIC10_RS04140 - 694756..696204 (-) 1449 WP_032517890.1 DNA helicase -
  SIC10_RS04145 - 696300..697139 (+) 840 WP_032517891.1 prephenate/arogenate dehydrogenase -
  SIC10_RS04150 crtD 697129..698634 (-) 1506 WP_032517892.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39457.17 Da        Isoelectric Point: 6.7397

>NTDB_id=906443 SIC10_RS04130 WP_011819174.1 693381..694478(+) (recA) [Prochlorococcus sp. MIT 9321]
MSLEEKKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906443 SIC10_RS04130 WP_011819174.1 693381..694478(+) (recA) [Prochlorococcus sp. MIT 9321]
ATGAGCCTTGAAGAAAAGAAAAAAACTGAATCAAAAGAAAAAGACAAAGCATTAAGTCTCGTCTTAGGTCAAATAGAAAG
AAATTTTGGAAGAGGATCAATTATGAGGCTTGGTGATGCCTCAAGAATGAAAGTAGAAACAATATCGACTGGAGCGCTTA
CCTTAGATTTAGCCTTAGGAGGAGGCTATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGGAAAACG
ACATTAACGTTACACGCAATTGCAGAAGTCCAAAAAAATGGAGGAGTAGCTGCATTTGTAGATGCTGAGCATGCGCTCGA
TCCAGTTTATGCAGCCTCTTTAGGGGTTGATGTTGAAAATTTATTAGTTTCTCAACCAGATACTGGGGAAATGGCTCTAG
AAATAGTTGACCAACTCATAAGATCGAGTGCAGTAGATCTAGTTGTTGTTGACTCGGTAGCAGCACTAACTCCAAGAGCG
GAAATAGAAGGGGAGATGGGGGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGTCAAGCGATGAGAAAGATAACAGG
CAATATTGGCAAATCTGGATGTACGGTAATATTCCTGAATCAATTAAGACTAAAAATCGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGAAATGCATTAAAATTTTATGCCTCAGTGAGGCTAGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATACGGAATAAGAGCAAAAGTAAAAGTAGCAAAAAACAAAGTTGCACCGCCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATCAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAAACTAATATCATAATAAGGA
GAGGCGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATTAGGAATAAAGTAGAATCTATGGTTAAAGAGAAATTAACAGAAGGTACTGAAGTCAGTTCTAATTCAATGAAAGC
ACTTAACAGCAATCCTGCTAATACAATTGCTGTTAATGATATAAAAACAGTGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2BTE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

90.137

0.537
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51