Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB91_RS03640 Genome accession   NZ_CP138977
Coordinates   614195..615292 (+) Length   365 a.a.
NCBI ID   WP_011819174.1    Uniprot ID   A2BTE1
Organism   Prochlorococcus marinus str. MIT 9201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609195..620292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB91_RS03605 - 609769..610071 (-) 303 WP_032521984.1 50S ribosomal protein L23 -
  SIB91_RS03610 rplD 610068..610700 (-) 633 WP_032521983.1 50S ribosomal protein L4 -
  SIB91_RS03615 rplC 610697..611350 (-) 654 WP_032521982.1 50S ribosomal protein L3 -
  SIB91_RS03620 ndhN 611632..612108 (+) 477 WP_032521980.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB91_RS03625 - 612114..613121 (+) 1008 WP_032521979.1 LdpA C-terminal domain-containing domain -
  SIB91_RS03635 - 613306..614082 (+) 777 WP_032522121.1 HAD family hydrolase -
  SIB91_RS03640 recA 614195..615292 (+) 1098 WP_011819174.1 recombinase RecA Machinery gene
  SIB91_RS03645 - 615295..615540 (-) 246 WP_032521978.1 DUF2839 domain-containing protein -
  SIB91_RS03650 - 615570..617018 (-) 1449 WP_032521977.1 DNA helicase -
  SIB91_RS03655 - 617114..617953 (+) 840 WP_032521976.1 prephenate/arogenate dehydrogenase -
  SIB91_RS03660 crtD 617943..619448 (-) 1506 WP_032521975.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39457.17 Da        Isoelectric Point: 6.7397

>NTDB_id=906427 SIB91_RS03640 WP_011819174.1 614195..615292(+) (recA) [Prochlorococcus marinus str. MIT 9201]
MSLEEKKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906427 SIB91_RS03640 WP_011819174.1 614195..615292(+) (recA) [Prochlorococcus marinus str. MIT 9201]
ATGAGCCTTGAAGAAAAGAAAAAAACCGAATCAAAAGAAAAAGACAAGGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGATCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCTCTCA
CCTTAGATTTAGCATTAGGAGGAGGCTATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGAAAAACC
ACATTAACGCTTCACGCGATCGCGGAAGTCCAAAAGAATGGAGGAGTAGCTGCATTTGTAGATGCTGAACATGCACTCGA
TCCAGTTTATGCAGCCTCCTTAGGAGTTGATGTTGAAAATTTGTTAGTTTCACAACCAGATACTGGAGAAATGGCTCTAG
AAATAGTTGACCAACTTATAAGATCGAGTGCAGTAGATCTTGTAGTTGTTGACTCGGTCGCAGCACTAACCCCAAGGGCT
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGCCAAGCAATGAGGAAAATAACAGG
AAATATCGGCAAATCTGGATGTACAGTAATATTCCTGAATCAATTACGCCTAAAAATTGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTAAAATTTTACGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTTGCACCACCATTTAGAATTGCAGAGTT
TGATATTCTCTTTGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAGACTAATATTATAATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGCGAAAATATTGGACAAGGAAGAGATAATACAATAATTTGGCTTGATCAAAACCTA
GAAATCAGGAATAAAGTAGAATCCATGGTTAAAGAGAAATTAACAGAAGGAACTGAAGTCAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAATACAATCGCAGTTAATGATATAAAAACCGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2BTE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

90.137

0.537
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51