Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB57_RS07685 Genome accession   NZ_CP138975
Coordinates   1287515..1288612 (+) Length   365 a.a.
NCBI ID   WP_011863664.1    Uniprot ID   A3PF51
Organism   Prochlorococcus sp. MIT 1205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1282515..1293612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB57_RS07650 - 1283093..1283395 (-) 303 WP_011863658.1 50S ribosomal protein L23 -
  SIB57_RS07655 rplD 1283392..1284024 (-) 633 WP_011863659.1 50S ribosomal protein L4 -
  SIB57_RS07660 rplC 1284021..1284674 (-) 654 WP_011863660.1 50S ribosomal protein L3 -
  SIB57_RS07665 ndhN 1284955..1285431 (+) 477 WP_011863661.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB57_RS07670 - 1285437..1286444 (+) 1008 WP_011863662.1 LdpA C-terminal domain-containing domain -
  SIB57_RS07680 - 1286627..1287403 (+) 777 WP_011863663.1 HAD family hydrolase -
  SIB57_RS07685 recA 1287515..1288612 (+) 1098 WP_011863664.1 recombinase RecA Machinery gene
  SIB57_RS07690 - 1288615..1288860 (-) 246 WP_011863665.1 DUF2839 domain-containing protein -
  SIB57_RS07695 - 1288890..1290338 (-) 1449 WP_011863666.1 DNA helicase -
  SIB57_RS07700 - 1290435..1291274 (+) 840 WP_011863667.1 prephenate/arogenate dehydrogenase -
  SIB57_RS07705 crtD 1291264..1292769 (-) 1506 WP_011863668.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39430.10 Da        Isoelectric Point: 6.3069

>NTDB_id=906413 SIB57_RS07685 WP_011863664.1 1287515..1288612(+) (recA) [Prochlorococcus sp. MIT 1205]
MSLEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906413 SIB57_RS07685 WP_011863664.1 1287515..1288612(+) (recA) [Prochlorococcus sp. MIT 1205]
ATGAGCCTTGAAGAAAAGAAAACAACTGAATCAAAAGAAAAAGACAAGGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTCGGAAGAGGATCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTTGAAACAATATCTACTGGAGCGCTGA
CCTTAGATTTAGCATTAGGAGGAGGATATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGAAAAACT
ACATTAACACTTCACGCGATTGCGGAAGTCCAAAAGAATGGAGGAGTAGCTGCATTTGTAGATGCTGAGCATGCACTCGA
TCCAGTTTATGCAGCCTCTCTAGGAGTTGATGTTGAAAATTTGTTAGTTTCACAACCAGATACTGGTGAAATGGCTCTAG
AAATAGTTGACCAACTTATAAGATCAAGTGCAGTAGATCTTGTTGTTGTTGACTCGGTCGCTGCACTAACCCCAAGAGCC
GAGATAGAAGGAGAAATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGTCAAGCAATGAGGAAAATAACAGG
GAATATTGGCAAATCTGGTTGTACGGTAATATTCCTGAATCAATTACGCCTAAAAATTGGAGTTACGTACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTAAAATTTTATGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGTATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTTGCACCACCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAAACTAATATCATAATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGGAGAGATAACACAATTATTTGGCTTGATCAAAACTTA
GAAATTAGGAATAAAGTAGAATCCATGGTTAAGGAGAAATTAACAGAAGGGACTGAAGTAAGTTCTAATTCAATGAAAGC
ATTAAATAGTAATCCAGCTAATACAATCGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3PF51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.464

100

0.556
  recA Streptococcus pneumoniae D39

55.464

100

0.556
  recA Streptococcus pneumoniae R6

55.464

100

0.556
  recA Streptococcus pneumoniae TIGR4

55.464

100

0.556
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.982

91.507

0.54
  recA Streptococcus mutans UA159

57.27

92.329

0.529
  recA Streptococcus mitis NCTC 12261

56.805

92.603

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Streptococcus mitis SK321

56.509

92.603

0.523
  recA Streptococcus pyogenes NZ131

53.693

96.438

0.518
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51