Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB72_RS06505 Genome accession   NZ_CP138971
Coordinates   1292054..1293214 (+) Length   386 a.a.
NCBI ID   WP_413745011.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287054..1298214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB72_RS06480 - 1287699..1288160 (+) 462 WP_115019249.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB72_RS06485 - 1288209..1289243 (+) 1035 WP_413745008.1 LdpA C-terminal domain-containing domain -
  SIB72_RS06490 - 1289280..1290932 (+) 1653 WP_413745009.1 AAA family ATPase -
  SIB72_RS06500 - 1291125..1291901 (+) 777 WP_413745010.1 HAD family hydrolase -
  SIB72_RS06505 recA 1292054..1293214 (+) 1161 WP_413745011.1 recombinase RecA Machinery gene
  SIB72_RS06510 - 1293258..1293632 (-) 375 WP_413745012.1 DUF1815 family protein -
  SIB72_RS06515 - 1293754..1293993 (-) 240 WP_115121299.1 DUF2839 domain-containing protein -
  SIB72_RS06520 - 1294058..1295506 (-) 1449 WP_115121300.1 helicase -
  SIB72_RS06525 - 1295589..1296461 (+) 873 WP_413745061.1 prephenate/arogenate dehydrogenase -
  SIB72_RS06530 crtD 1296505..1298025 (-) 1521 WP_413745013.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 40838.55 Da        Isoelectric Point: 7.1450

>NTDB_id=906373 SIB72_RS06505 WP_413745011.1 1292054..1293214(+) (recA) [Synechococcus sp. MIT S9451]
MPVDVKAAQSSGSDARPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKETIEVLVRQKLTDGSEVTSNSMRPLAAAARTAAAKGNAAAATADKKVDDPKAASAAA

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=906373 SIB72_RS06505 WP_413745011.1 1292054..1293214(+) (recA) [Synechococcus sp. MIT S9451]
ATGCCAGTTGACGTGAAAGCCGCCCAGTCCTCCGGATCCGATGCTCGCCCCGGTGAGCGCGATAAAGCCCTGAACCTTGT
GCTTGGTCAGATCGAGCGCAATTTTGGCAAGGGATCGATCATGCGCCTTGGGGATGCCTCCCGAATGCGGGTTGAAACCA
TCTCGACTGGTGCCCTCACTCTCGATCTCGCTCTGGGTGGCGGTTATCCCAAAGGGCGTGTGGTGGAGGTTTACGGCCCG
GAGAGTTCTGGTAAGACCACGCTGACGTTGCATGCGATCGCTGAAGTGCAGCGTCGGGGTGGTGTGGCTGCCTTTGTGGA
TGCTGAGCACGCCCTCGATCCGGTGTATGCCGCGTCGCTAGGCGTCGACATCGAGAATCTTCTCGTCTCCCAGCCCGACA
CCGGTGAGATGGCGTTGGAGATCGTGGATCAGCTGGTGCGTTCGGCCGCGGTGGATATCGTCGTGGTCGACTCTGTGGCA
GCTCTGACTCCCCGCGCTGAGATCGAAGGGGAAATGGGTGATTTGGCTGTGGGGAGTCAGGCTCGTTTAATGAGCCAGGC
GATGCGCAAGATCACTGGCAACATTGGCAAGTCTGGTTGCACGGTGATTTTCCTCAATCAGTTGCGCCTGAAGATTGGGG
TCACCTATGGCAATCCGGAGACCACGACTGGTGGTAACGCTCTCAAGTTCTATGCGTCAGTGCGGCTTGATATTCGTCGC
ATTCAGACCCTGAAGCGCGGTACCGAGGAATACGGCATCCGGGCCAAGGTCAAGGTGGCCAAAAACAAGGTGGCGCCCCC
GTTCCGGATCGCAGAATTTGACATCCTGTTCGGCCGTGGCATCAGCACCCTTGGTTGCTTGTTGGATCTCGCTGAAGAAA
CCGGTGTGGTGATCCGCAAAGGGGCCTGGTACAGCTACGAAGGCGACAACATCGGTCAGGGTCGCGACAACACCATCGGC
TGGCTCGAGCAGAACCCCGAAGCCAAGGAGACGATCGAGGTGTTGGTGCGTCAGAAGCTCACCGATGGCTCAGAAGTGAC
CTCCAACTCGATGCGACCTCTTGCAGCGGCTGCGCGCACGGCGGCTGCCAAGGGCAATGCAGCTGCAGCTACCGCCGATA
AAAAGGTCGACGATCCCAAGGCTGCATCAGCTGCGGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.653

85.751

0.554
  recA Pseudomonas stutzeri DSM 10701

64.596

83.42

0.539
  recA Acinetobacter baumannii D1279779

64.596

83.42

0.539
  recA Vibrio cholerae strain A1552

62.654

83.938

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.654

83.938

0.526
  recA Ralstonia pseudosolanacearum GMI1000

64.63

80.57

0.521
  recA Glaesserella parasuis strain SC1401

61.35

84.456

0.518
  recA Neisseria gonorrhoeae MS11

59.94

86.01

0.516
  recA Neisseria gonorrhoeae MS11

59.94

86.01

0.516
  recA Neisseria gonorrhoeae strain FA1090

59.94

86.01

0.516
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

83.161

0.513
  recA Helicobacter pylori 26695

57.988

87.565

0.508
  recA Helicobacter pylori strain NCTC11637

57.988

87.565

0.508
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

85.233

0.505
  recA Streptococcus pneumoniae Rx1

57.101

87.565

0.5
  recA Streptococcus pneumoniae D39

57.101

87.565

0.5
  recA Streptococcus pneumoniae R6

57.101

87.565

0.5
  recA Streptococcus pneumoniae TIGR4

57.101

87.565

0.5
  recA Streptococcus mitis SK321

56.105

89.119

0.5
  recA Streptococcus mitis NCTC 12261

56.805

87.565

0.497
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

83.161

0.497
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

82.902

0.492
  recA Lactococcus lactis subsp. cremoris KW2

56.716

86.788

0.492
  recA Streptococcus mutans UA159

57.846

84.197

0.487
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.988

86.528

0.484
  recA Streptococcus pyogenes NZ131

55.963

84.715

0.474