Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB74_RS08605 Genome accession   NZ_CP138959
Coordinates   1707762..1708901 (-) Length   379 a.a.
NCBI ID   WP_011826900.1    Uniprot ID   A0A163GCW3
Organism   Prochlorococcus sp. MIT 1306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702762..1713901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB74_RS08585 crtD 1703453..1704964 (+) 1512 WP_063396921.1 C-3',4' desaturase CrtD -
  SIB74_RS08590 - 1704924..1705868 (-) 945 WP_063396920.1 prephenate/arogenate dehydrogenase -
  SIB74_RS08595 - 1705927..1707372 (+) 1446 WP_063396919.1 hypothetical protein -
  SIB74_RS08600 - 1707414..1707653 (+) 240 WP_063396918.1 DUF2839 domain-containing protein -
  SIB74_RS08605 recA 1707762..1708901 (-) 1140 WP_011826900.1 recombinase RecA Machinery gene
  SIB74_RS08610 - 1709055..1709831 (-) 777 WP_063396917.1 HAD family hydrolase -
  SIB74_RS08620 - 1710023..1711660 (-) 1638 WP_063396916.1 AAA family ATPase -
  SIB74_RS08625 - 1711715..1712686 (-) 972 WP_063397014.1 LdpA C-terminal domain-containing domain -
  SIB74_RS08630 - 1712758..1713219 (-) 462 WP_063396915.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40547.24 Da        Isoelectric Point: 6.5249

>NTDB_id=906260 SIB74_RS08605 WP_011826900.1 1707762..1708901(-) (recA) [Prochlorococcus sp. MIT 1306]
MSVDVKSAQSSKSDSLQAEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAQEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPAVSLASEAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=906260 SIB74_RS08605 WP_011826900.1 1707762..1708901(-) (recA) [Prochlorococcus sp. MIT 1306]
ATGTCAGTTGACGTGAAATCAGCCCAATCCTCTAAGTCTGATTCCCTCCAAGCTGAGCCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGTGCGCTGACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTGCAGCGTCGTGGTGGCGT
CGCTGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTCTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TCTCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATAGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCTCGGTCTGAGATCGAAGGTGAGATGGGCGATTTGGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAGATCACTGGCAACATCGGCAAATCCGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGCAATGCTCTCAAGTTTTATGCCTCCGTACGT
CTCGATATCCGTCGTATTCAAACGCTCAAGCGCGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCTAAAAA
CAAGGTAGCCCCTCCGTTTCGTATTGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCCCAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCTAATTCCATGCGTCCGTTGGCGGCTGCGGCCCGTACTGCGGCTAAAAAACCAGCCGTCAGCT
TGGCATCTGAAGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A163GCW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.335

0.559
  recA Acinetobacter baumannii D1279779

63.975

84.96

0.544
  recA Pseudomonas stutzeri DSM 10701

63.354

84.96

0.538
  recA Glaesserella parasuis strain SC1401

58.651

89.974

0.528
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.058

0.525
  recA Vibrio cholerae strain A1552

61.491

84.96

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.96

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae strain FA1090

59.036

87.599

0.517
  recA Streptococcus mitis NCTC 12261

53.74

95.251

0.512
  recA Helicobacter pylori strain NCTC11637

57.101

89.182

0.509
  recA Helicobacter pylori 26695

57.101

89.182

0.509
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.807

0.509
  recA Streptococcus pneumoniae R6

56.677

88.918

0.504
  recA Streptococcus pneumoniae Rx1

56.677

88.918

0.504
  recA Streptococcus pneumoniae D39

56.677

88.918

0.504
  recA Streptococcus pneumoniae TIGR4

56.677

88.918

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.879

84.697

0.499
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

84.433

0.496
  recA Streptococcus mitis SK321

56.287

88.127

0.496
  recA Lactococcus lactis subsp. cremoris KW2

55.821

88.391

0.493
  recA Streptococcus mutans UA159

56.923

85.752

0.488
  recA Streptococcus pyogenes NZ131

55.046

86.28

0.475
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.646

83.377

0.472