Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB79_RS08955 Genome accession   NZ_CP138957
Coordinates   1738781..1739920 (-) Length   379 a.a.
NCBI ID   WP_063405128.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1342     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1733781..1744920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB79_RS08935 crtD 1734472..1735983 (+) 1512 WP_063405133.1 C-3',4' desaturase CrtD -
  SIB79_RS08940 - 1735943..1736887 (-) 945 WP_063405132.1 prephenate/arogenate dehydrogenase -
  SIB79_RS08945 - 1736946..1738391 (+) 1446 WP_063405131.1 hypothetical protein -
  SIB79_RS08950 - 1738433..1738672 (+) 240 WP_011826899.1 DUF2839 domain-containing protein -
  SIB79_RS08955 recA 1738781..1739920 (-) 1140 WP_063405128.1 recombinase RecA Machinery gene
  SIB79_RS08960 - 1740074..1740850 (-) 777 WP_063405126.1 HAD family hydrolase -
  SIB79_RS08970 - 1741042..1742679 (-) 1638 WP_063405124.1 AAA family ATPase -
  SIB79_RS08975 - 1742734..1743705 (-) 972 WP_063405433.1 LdpA C-terminal domain-containing domain -
  SIB79_RS08980 - 1743777..1744238 (-) 462 WP_011131098.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40603.35 Da        Isoelectric Point: 6.5249

>NTDB_id=906238 SIB79_RS08955 WP_063405128.1 1738781..1739920(-) (recA) [Prochlorococcus sp. MIT 1342]
MSVDVKSAQSSKSDSLQVEPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETFPTGALTLDLALGGGYPKGRVV
EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVV
VDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVR
LDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR
DNTITWLEQNSEAQEQIEVLVRQKLTEGSEVTANSMRPLAAAARTAAKKPVVSLASEAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=906238 SIB79_RS08955 WP_063405128.1 1738781..1739920(-) (recA) [Prochlorococcus sp. MIT 1342]
ATGTCAGTTGACGTGAAATCAGCCCAATCCTCTAAGTCTGATTCCCTCCAGGTTGAACCCCGTCCAGGTGAGCGGGACAA
AGCTCTCAATTTGGTGCTTGGTCAGATTGAACGCAATTTTGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCTCGGA
TGCGGGTGGAGACCTTCCCTACAGGGGCGCTGACCCTTGATCTTGCCCTTGGCGGTGGGTACCCGAAAGGACGAGTCGTG
GAGGTGTACGGCCCGGAGAGTTCCGGTAAAACCACCCTCACCCTGCATGCCATCGCCGAGGTACAGCGTCGTGGTGGCGT
CGCAGCTTTTGTGGATGCCGAGCATGCGCTCGATCCGGTCTACGCAGCCTCTTTAGGAGTGGATATTGAGAACCTGCTGG
TCTCGCAGCCGGACACGGGGGAGATGGCTCTGGAGATAGTCGACCAGCTTGTGCGCTCTGCCGCCGTTGATATCGTTGTT
GTGGATTCCGTTGCTGCGCTCACTCCTCGGTCTGAGATCGAAGGTGAGATGGGCGATTTAGCTGTGGGTAGCCAGGCCCG
TCTGATGAGTCAGGCGATGCGCAAGATCACTGGCAACATCGGCAAATCTGGCTGCACGGTCATTTTTCTCAACCAGTTGC
GTCTCAAGATAGGCGTCACTTACGGCAACCCGGAGACGACGACTGGTGGTAATGCTCTCAAGTTTTACGCCTCCGTACGT
CTCGATATCCGTCGTATTCAAACGCTCAAGCGCGGCACGGAGGAGTATGGAATTCGTGCCAAGGTGAAGGTGGCTAAAAA
CAAGGTAGCCCCTCCGTTTCGTATTGCTGAGTTCGACATTCTTTTTGGTCGTGGCATCAGTACCTTGGGTTGCTTGCTTG
ACCTAGCTGAAGAAACCGGTGTTGTCATCCGTAAGGGTGCCTGGTACAGCTATGAGGGCGACAATATCGGTCAGGGACGT
GACAACACGATTACTTGGCTTGAGCAGAATTCTGAAGCTCAGGAGCAGATTGAAGTTCTTGTGCGTCAGAAACTCACTGA
AGGGTCTGAGGTGACCGCTAATTCCATGCGTCCGTTGGCGGCTGCGGCGCGTACTGCGGCTAAAAAACCTGTCGTCAGCT
TGGCATCTGAAGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(27-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.335

0.559
  recA Acinetobacter baumannii D1279779

63.975

84.96

0.544
  recA Pseudomonas stutzeri DSM 10701

63.354

84.96

0.538
  recA Glaesserella parasuis strain SC1401

58.651

89.974

0.528
  recA Ralstonia pseudosolanacearum GMI1000

63.987

82.058

0.525
  recA Vibrio cholerae strain A1552

61.491

84.96

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.96

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Neisseria gonorrhoeae strain FA1090

59.036

87.599

0.517
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Neisseria gonorrhoeae MS11

59.036

87.599

0.517
  recA Streptococcus mitis NCTC 12261

53.74

95.251

0.512
  recA Helicobacter pylori 26695

57.101

89.182

0.509
  recA Helicobacter pylori strain NCTC11637

57.101

89.182

0.509
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.807

0.509
  recA Streptococcus pneumoniae Rx1

56.677

88.918

0.504
  recA Streptococcus pneumoniae D39

56.677

88.918

0.504
  recA Streptococcus pneumoniae R6

56.677

88.918

0.504
  recA Streptococcus pneumoniae TIGR4

56.677

88.918

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.879

84.697

0.499
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

84.433

0.496
  recA Streptococcus mitis SK321

56.287

88.127

0.496
  recA Lactococcus lactis subsp. cremoris KW2

55.821

88.391

0.493
  recA Streptococcus mutans UA159

56.923

85.752

0.488
  recA Streptococcus pyogenes NZ131

55.046

86.28

0.475
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.646

83.377

0.472