Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB46_RS10665 Genome accession   NZ_CP138956
Coordinates   2009111..2010232 (+) Length   373 a.a.
NCBI ID   WP_413296122.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9452     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004111..2015232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB46_RS10635 rplC 2004149..2004796 (-) 648 WP_011936530.1 50S ribosomal protein L3 -
  SIB46_RS10640 - 2005148..2005609 (+) 462 WP_413296118.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB46_RS10645 - 2005599..2006621 (+) 1023 WP_413296119.1 LdpA C-terminal domain-containing domain -
  SIB46_RS10650 - 2006651..2008063 (+) 1413 WP_413296120.1 AAA family ATPase -
  SIB46_RS10660 - 2008213..2008983 (+) 771 WP_413296121.1 HAD family hydrolase -
  SIB46_RS10665 recA 2009111..2010232 (+) 1122 WP_413296122.1 recombinase RecA Machinery gene
  SIB46_RS10670 - 2010239..2010568 (-) 330 WP_413296123.1 DUF1815 family protein -
  SIB46_RS10675 - 2010670..2010912 (-) 243 WP_413296124.1 DUF2839 domain-containing protein -
  SIB46_RS10680 - 2010922..2012367 (-) 1446 WP_413296125.1 helicase -
  SIB46_RS10685 - 2012424..2013290 (+) 867 WP_413296126.1 prephenate/arogenate dehydrogenase -
  SIB46_RS10690 crtD 2013263..2014747 (-) 1485 WP_413296127.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39764.47 Da        Isoelectric Point: 6.5176

>NTDB_id=906231 SIB46_RS10665 WP_413296122.1 2009111..2010232(+) (recA) [Synechococcus sp. MIT S9452]
MADPKSNQAPAAEREKALGLVLNQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPESSGKT
TLTLHAIAEVQRSGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAALTPRA
EIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRMQTLKR
ATEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYNGDNVGQGRDNTITWLEQNP
EACQEIEQLTREKLTAGADVTANSMKPLAAVGAKRKQGAERPAEAPKPLAEAS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=906231 SIB46_RS10665 WP_413296122.1 2009111..2010232(+) (recA) [Synechococcus sp. MIT S9452]
ATGGCCGATCCCAAGTCCAACCAAGCTCCCGCTGCTGAGCGTGAAAAGGCCCTGGGTCTGGTGCTGAATCAGATCGAACG
CAACTTCGGCAAGGGTTCGATCATGCGCTTGGGGGATGCCTCCCGCATGCGGGTTGAAACCATCTCCACCGGTGCGCTCA
CCTTGGATCTCGCCCTGGGCGGCGGTTATCCCAAAGGCCGCGTTGTTGAGATTTACGGCCCGGAAAGCTCCGGTAAAACC
ACGCTCACCCTGCATGCCATTGCTGAGGTGCAACGGAGTGGTGGTGTGGCGGCCTTTGTCGATGCTGAGCACGCGCTTGA
TCCTGTTTATGCCGCCTCGTTGGGGGTGGATATCGAGAACCTATTGGTGTCTCAGCCCGACACCGGCGAAATGGCCCTCG
AGATCGTTGATCAGCTGGTGCGTTCAGCGGCTGTCGATCTGGTGGTCGTCGACTCGGTGGCGGCGTTGACTCCTCGCGCT
GAGATTGAAGGGGAGATGGGTGATCTGGCTGTGGGCGCTCAGGCCCGTCTGATGAGCCAGGCGATGCGCAAGATCACCGG
CAACATCGGCAAGTCCGGTTGCACGGTGATCTTCCTCAACCAGCTCAGGCTCAAGATCGGCGTCACCTACGGCAATCCAG
AAACCACCACTGGTGGTAATGCACTGAAGTTCTATGCCTCGGTGCGTCTCGATATCCGCCGCATGCAGACCCTCAAGCGC
GCCACGGAGGAGTACGGCATTCGGGCCAAGGTCAAGGTGGCCAAAAACAAGGTGGCACCACCGTTCCGCATCGCCGAGTT
CGACATCCTGTTTGGCCGCGGCATCAGCACCTTGGGATGCCTGTTGGACCTCGCTGAGGAAACCGGCGTGGTGGTCCGTA
AAGGCGCTTGGTACAGCTACAACGGCGACAACGTTGGCCAAGGCCGCGACAACACGATCACTTGGCTCGAGCAAAACCCC
GAGGCCTGCCAAGAGATTGAGCAGCTCACCCGCGAAAAGCTCACTGCTGGCGCTGATGTGACGGCCAATTCGATGAAGCC
CCTGGCGGCGGTTGGTGCCAAGCGCAAGCAGGGAGCTGAGCGTCCGGCTGAAGCTCCCAAGCCCTTGGCTGAAGCCAGCT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.257

88.74

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.284

89.812

0.568
  recA Acinetobacter baumannii D1279779

64.907

86.327

0.56
  recA Pseudomonas stutzeri DSM 10701

64.907

86.327

0.56
  recA Vibrio cholerae strain A1552

62.733

86.327

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.327

0.542
  recA Neisseria gonorrhoeae MS11

58.892

91.957

0.542
  recA Neisseria gonorrhoeae MS11

58.892

91.957

0.542
  recA Neisseria gonorrhoeae strain FA1090

58.892

91.957

0.542
  recA Glaesserella parasuis strain SC1401

60.606

88.472

0.536
  recA Helicobacter pylori 26695

58.58

90.617

0.531
  recA Helicobacter pylori strain NCTC11637

58.58

90.617

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.104

89.812

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.905

84.45

0.523
  recA Bacillus subtilis subsp. subtilis str. 168

60.559

86.327

0.523
  recA Streptococcus mitis NCTC 12261

58.462

87.131

0.509
  recA Streptococcus mitis SK321

58.462

87.131

0.509
  recA Streptococcus pneumoniae Rx1

57.927

87.936

0.509
  recA Streptococcus pneumoniae D39

57.927

87.936

0.509
  recA Streptococcus pneumoniae R6

57.927

87.936

0.509
  recA Streptococcus pneumoniae TIGR4

57.927

87.936

0.509
  recA Streptococcus mutans UA159

57.716

86.863

0.501
  recA Latilactobacillus sakei subsp. sakei 23K

59.365

84.45

0.501
  recA Lactococcus lactis subsp. cremoris KW2

57.231

87.131

0.499
  recA Streptococcus pyogenes NZ131

56.575

87.668

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.231

88.204

0.496