Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB56_RS13715 Genome accession   NZ_CP138955
Coordinates   2547596..2548738 (+) Length   380 a.a.
NCBI ID   WP_413324436.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2542596..2553738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB56_RS13690 - 2543273..2543734 (+) 462 WP_413324433.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB56_RS13695 - 2543746..2544780 (+) 1035 WP_413327439.1 LdpA C-terminal domain-containing domain -
  SIB56_RS13700 - 2544851..2546485 (+) 1635 WP_413324434.1 AAA family ATPase -
  SIB56_RS13710 - 2546679..2547443 (+) 765 WP_413324435.1 HAD family hydrolase -
  SIB56_RS13715 recA 2547596..2548738 (+) 1143 WP_413324436.1 recombinase RecA Machinery gene
  SIB56_RS13720 - 2548739..2549083 (-) 345 WP_413324437.1 DUF1815 family protein -
  SIB56_RS13725 - 2549159..2549398 (-) 240 WP_114993304.1 DUF2839 domain-containing protein -
  SIB56_RS13730 - 2549439..2550881 (-) 1443 WP_413324438.1 helicase -
  SIB56_RS13735 - 2550982..2551887 (+) 906 WP_413327441.1 prephenate/arogenate dehydrogenase -
  SIB56_RS13740 crtD 2551871..2553385 (-) 1515 WP_413324439.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40254.82 Da        Isoelectric Point: 6.5225

>NTDB_id=906221 SIB56_RS13715 WP_413324436.1 2547596..2548738(+) (recA) [Synechococcus sp. MIT S9503]
MPADVKASQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPLPKSADQAASSKDAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=906221 SIB56_RS13715 WP_413324436.1 2547596..2548738(+) (recA) [Synechococcus sp. MIT S9503]
ATGCCAGCCGATGTGAAAGCCTCCCAGTCCTCCGGTGGAGATGTCCGCCCCGGTGAGCGTGATAAAGCGCTCAACCTCGT
GCTCGGTCAGATCGAGCGCAATTTCGGCAAGGGATCGATCATGCGCCTTGGGGACGCATCCAGGATGCGGGTCGAGACGA
TTTCCACAGGTGCCCTCACCCTTGATCTCGCCCTGGGTGGTGGATATCCCAAGGGGCGTGTTGTCGAGGTCTACGGCCCG
GAAAGTTCGGGTAAGACCACGTTGACCCTGCATGCCATCGCCGAGGTTCAGCGCAACGGAGGCGTCGCCGCCTTCGTTGA
TGCCGAGCATGCTCTCGACCCTGTGTATGCCGCATCGCTGGGTGTGGATGTCGAGAATCTGCTTGTCTCTCAGCCAGACA
CCGGCGAGATGGCGCTGGAGATCGTGGATCAGCTGGTTCGTTCAGCTGCAGTCGACATCGTGGTGGTTGACTCGGTCGCC
GCTCTCACGCCTCGTGCCGAAATCGAGGGCGAGATGGGAGATCTTGCTGTTGGCAGTCAGGCCCGTCTGATGAGCCAGGC
GATGCGAAAGATCACCGGCAACATCGGCAAGTCAGGTTGCACGGTGATTTTTCTCAACCAGTTGCGTCTCAAAATCGGCG
TCACTTACGGCAACCCGGAAACCACCACCGGTGGCAACGCTCTCAAGTTCTATGCCTCGGTTCGGCTTGATATCCGCCGT
ATTCAAACGCTCAAGCGCGGCACCGAGGAATACGGCATCCGCGCCAAGGTGAAGGTGGCTAAGAACAAGGTGGCTCCTCC
TTTCCGGATCGCGGAATTCGACATTCTCTTCGGTCGTGGCATCAGCACGCTGGGCTGTCTTCTCGACCTGGCGGAGGAAA
CGGGTGTCGTGACCCGCAAGGGAGCCTGGTACAGCTATGAAGGCGACAACATCGGTCAGGGTCGTGACAACACCATCGGC
TGGCTGGAACAGAATCCAGAAGCCAAGGATGCGATTGAGGTGCTGGTGCGTCAGAAGCTGACGGAAGGTTCGGAGGTCAC
CTCCAATTCGATGCGCCCTCTGGCAGCTGCGGCACGTTCGGCTGCAGCCAAGCCTCTCCCCAAGTCCGCCGACCAGGCTG
CTTCGTCGAAGGACGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.35

87.105

0.561
  recA Pseudomonas stutzeri DSM 10701

64.907

84.737

0.55
  recA Acinetobacter baumannii D1279779

63.975

84.737

0.542
  recA Neisseria gonorrhoeae MS11

61.145

87.368

0.534
  recA Neisseria gonorrhoeae MS11

61.145

87.368

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.145

87.368

0.534
  recA Glaesserella parasuis strain SC1401

61.774

86.053

0.532
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.842

0.532
  recA Vibrio cholerae strain A1552

62.422

84.737

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

84.737

0.529
  recA Bacillus subtilis subsp. subtilis str. 168

59.639

87.368

0.521
  recA Helicobacter pylori 26695

58.58

88.947

0.521
  recA Helicobacter pylori strain NCTC11637

58.58

88.947

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.967

86.579

0.511
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

84.474

0.508
  recA Streptococcus pneumoniae Rx1

56.805

88.947

0.505
  recA Streptococcus pneumoniae D39

56.805

88.947

0.505
  recA Streptococcus pneumoniae R6

56.805

88.947

0.505
  recA Streptococcus pneumoniae TIGR4

56.805

88.947

0.505
  recA Streptococcus mitis NCTC 12261

56.509

88.947

0.503
  recA Streptococcus mitis SK321

55.523

90.526

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.211

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.418

88.158

0.497
  recA Streptococcus mutans UA159

57.846

85.526

0.495
  recA Streptococcus pyogenes NZ131

55.963

86.053

0.482
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.158

0.479