Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB37_RS00540 Genome accession   NZ_CP138954
Coordinates   88575..89717 (-) Length   380 a.a.
NCBI ID   WP_413403870.1    Uniprot ID   -
Organism   Synechococcus sp. MIT S9510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 83575..94717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB37_RS00515 crtD 83926..85440 (+) 1515 WP_413403867.1 C-3',4' desaturase CrtD -
  SIB37_RS00520 - 85424..86329 (-) 906 WP_413403868.1 prephenate/arogenate dehydrogenase -
  SIB37_RS00525 - 86430..87872 (+) 1443 WP_413403869.1 helicase -
  SIB37_RS00530 - 87914..88153 (+) 240 WP_066904418.1 DUF2839 domain-containing protein -
  SIB37_RS00535 - 88230..88574 (+) 345 WP_413406099.1 DUF1815 family protein -
  SIB37_RS00540 recA 88575..89717 (-) 1143 WP_413403870.1 recombinase RecA Machinery gene
  SIB37_RS00545 - 89870..90634 (-) 765 WP_413403871.1 HAD family hydrolase -
  SIB37_RS00555 - 90829..92463 (-) 1635 WP_413403872.1 AAA family ATPase -
  SIB37_RS00560 - 92534..93505 (-) 972 WP_413403873.1 LdpA C-terminal domain-containing domain -
  SIB37_RS00565 - 93580..94041 (-) 462 WP_413403875.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40260.82 Da        Isoelectric Point: 6.5233

>NTDB_id=906200 SIB37_RS00540 WP_413403870.1 88575..89717(-) (recA) [Synechococcus sp. MIT S9510]
MPADVKASQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNQEAKDSIEVLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPLAKASEAAVSSKDAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=906200 SIB37_RS00540 WP_413403870.1 88575..89717(-) (recA) [Synechococcus sp. MIT S9510]
ATGCCAGCCGATGTGAAAGCCTCCCAGTCCTCCGGTGGAGATGTCCGCCCCGGTGAGCGCGACAAAGCGCTCAACCTTGT
GCTCGGTCAGATCGAGCGCAACTTCGGGAAGGGTTCGATCATGCGCCTCGGAGACGCTTCCAGGATGAGGGTGGAAACCA
TTTCCACTGGAGCCCTCACTCTGGATCTCGCTCTTGGAGGTGGGTATCCCAAGGGACGTGTCGTTGAGGTCTACGGACCC
GAAAGTTCCGGTAAGACCACGTTGACCCTGCATGCCATTGCTGAGGTTCAGCGCAACGGAGGTGTCGCCGCCTTCGTGGA
TGCCGAGCATGCTCTCGACCCGGTTTATGCCGCATCGTTGGGGGTGGATGTGGAAAACCTGCTGGTCTCCCAGCCGGATA
CGGGCGAAATGGCGCTGGAAATTGTTGATCAGCTGGTTCGTTCCGCGGCTGTCGACATCGTGGTGGTTGACTCCGTCGCC
GCTCTGACGCCCCGTGCCGAGATCGAGGGTGAGATGGGTGATCTGGCTGTGGGTAGTCAGGCCCGTCTGATGAGCCAGGC
AATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGTTGCACGGTGATTTTCCTCAACCAGCTGCGTCTCAAGATCGGCG
TCACTTACGGCAACCCGGAAACCACCACCGGTGGTAATGCCCTCAAGTTTTATGCCTCGGTGCGTCTTGATATCCGCCGT
ATTCAGACGCTCAAGCGCGGTACTGAGGAATATGGAATCCGCGCGAAGGTGAAGGTGGCCAAGAACAAGGTGGCTCCACC
CTTCCGCATCGCGGAATTCGACATTCTCTTTGGCCGTGGCATCAGTACGCTGGGTTGTTTGCTCGATCTGGCCGAGGAGA
CGGGTGTCGTGACTCGCAAGGGCGCCTGGTACAGCTATGAGGGCGACAACATCGGTCAGGGGCGTGACAACACCATCGGT
TGGCTGGAGCAGAACCAGGAAGCCAAGGATTCGATTGAAGTCTTGGTGCGTCAGAAGCTGACGGAAGGTTCGGAAGTCAC
CTCCAACTCCATGCGTCCTCTTGCTGCCGCCGCGCGTTCCGCTGCTGCCAAGCCTCTTGCCAAGGCCTCTGAGGCGGCTG
TGTCGTCGAAGGATGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.105

0.558
  recA Pseudomonas stutzeri DSM 10701

64.596

84.737

0.547
  recA Acinetobacter baumannii D1279779

63.975

84.737

0.542
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.842

0.532
  recA Neisseria gonorrhoeae MS11

60.843

87.368

0.532
  recA Neisseria gonorrhoeae MS11

60.843

87.368

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.843

87.368

0.532
  recA Glaesserella parasuis strain SC1401

61.468

86.053

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.737

0.526
  recA Vibrio cholerae strain A1552

62.112

84.737

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.639

87.368

0.521
  recA Helicobacter pylori 26695

58.58

88.947

0.521
  recA Helicobacter pylori strain NCTC11637

58.58

88.947

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.579

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

84.474

0.505
  recA Streptococcus pneumoniae Rx1

56.509

88.947

0.503
  recA Streptococcus pneumoniae D39

56.509

88.947

0.503
  recA Streptococcus pneumoniae R6

56.509

88.947

0.503
  recA Streptococcus pneumoniae TIGR4

56.509

88.947

0.503
  recA Streptococcus mitis SK321

55.233

90.526

0.5
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.211

0.5
  recA Streptococcus mitis NCTC 12261

56.213

88.947

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.716

88.158

0.5
  recA Streptococcus mutans UA159

57.538

85.526

0.492
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.615

85.526

0.484
  recA Streptococcus pyogenes NZ131

55.657

86.053

0.479