Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB87_RS06995 Genome accession   NZ_CP138951
Coordinates   1228980..1230077 (-) Length   365 a.a.
NCBI ID   WP_025915163.1    Uniprot ID   A0A0A2A8E8
Organism   Prochlorococcus marinus str. MIT 9302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1223980..1235077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB87_RS06975 crtD 1224823..1226328 (+) 1506 WP_032526284.1 C-3',4' desaturase CrtD -
  SIB87_RS06980 - 1226318..1227157 (-) 840 WP_032526283.1 prephenate/arogenate dehydrogenase -
  SIB87_RS06985 - 1227254..1228702 (+) 1449 WP_032526282.1 DNA helicase -
  SIB87_RS06990 - 1228732..1228977 (+) 246 WP_032526281.1 DUF2839 domain-containing protein -
  SIB87_RS06995 recA 1228980..1230077 (-) 1098 WP_025915163.1 recombinase RecA Machinery gene
  SIB87_RS07000 - 1230190..1230966 (-) 777 WP_032526280.1 HAD family hydrolase -
  SIB87_RS07010 - 1231158..1232156 (-) 999 WP_032526279.1 LdpA C-terminal domain-containing domain -
  SIB87_RS07015 ndhN 1232162..1232638 (-) 477 WP_032526277.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB87_RS07020 rplC 1232919..1233572 (+) 654 WP_032526276.1 50S ribosomal protein L3 -
  SIB87_RS07025 rplD 1233569..1234201 (+) 633 WP_032526275.1 50S ribosomal protein L4 -
  SIB87_RS07030 - 1234198..1234500 (+) 303 WP_011377190.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39439.14 Da        Isoelectric Point: 6.7397

>NTDB_id=906183 SIB87_RS06995 WP_025915163.1 1228980..1230077(-) (recA) [Prochlorococcus marinus str. MIT 9302]
MSLEEKKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESIVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=906183 SIB87_RS06995 WP_025915163.1 1228980..1230077(-) (recA) [Prochlorococcus marinus str. MIT 9302]
ATGAGTCTTGAAGAAAAGAAAAAAACTGAATCAAAAGAGAAAGACAAGGCATTAAGTCTCGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGGTCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCACTCA
CCTTAGATTTAGCATTAGGAGGAGGCTATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGTTCAGGAAAAACT
ACATTAACGCTTCACGCGATTGCGGAAGTCCAAAAAAATGGAGGAGTAGCTGCATTTGTTGATGCTGAGCATGCACTCGA
TCCAGTGTATGCAGCCTCTTTAGGCGTTGATGTTGAAAATTTGTTAGTTTCACAACCGGATACTGGTGAAATGGCTCTAG
AAATAGTTGACCAACTCATAAGATCGAGTGCAGTAGATCTTGTTGTTGTTGACTCGGTAGCAGCACTCACTCCAAGAGCC
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGTCAAGCAATGAGAAAAATAACAGG
AAATATTGGAAAATCTGGATGTACGGTAATATTCCTGAATCAATTACGCCTAAAGATTGGCGTCACGTACGGCAATCCAG
AAACAACCACAGGAGGAAATGCATTAAAATTTTATGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATACGGCATAAGAGCAAAAGTAAAAGTAGCAAAAAACAAAGTTGCACCACCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAAACTAATATCATAATAAGGA
GAGGCGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATTAGGAATAAAGTAGAATCCATTGTTAAAGAGAAATTAACAGAAGGTACTGAAGTCAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAATACAATCGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2A8E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

90.137

0.537
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.683

86.301

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51